myRT

myRT report for GCA_003461605.1_ASM346160v1

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Seq: QTXK01000001.1 Clostridium sp. AF15-49 AF15-49.Scaf1, whole genome shotgun sequence (821105 bp)
Overview 1 RT 1: 325174-330546 bp Neighborhood of RT #1 [325174, 330551] pfam13191 RVT-UG7 CpXC COG5015 Feature: gene Location: 325174-327258 bp Ori: RGH05869.1 Feature: domain Description: pfam13191 Location: 325348-325930 bp Feature: domain Description: pfam1 31 91 Location: 325348-325930 bp Feature: gene Location: 327245-327660 bp Feature: gene Location: 327756-329393 bp Ori: RGH05870.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 328209-328593 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 328209-328593 bp Feature: gene Location: 329474-330130 bp Ori: RGH05871.1 Feature: domain Description: CpXC Location: 329501-329882 bp Feature: domain Description: CpXC Location: 329501 -329882 bp Feature: gene Location: 330159-330551 bp Ori: RGH05872.1 Feature: domain Description: COG5015 Location: 330162-330546 bp Feature: domain Description: COG501 5 Location: 3301 62-330546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam13191 (AAA_16;AAA ATPase domain), RVT-UG7, CpXC (pfam14353), COG5015 (Uncharacterized protein, pyridoxamine 5'-phosphate oxidase (PNPOx-like) family )

Seq: QTXK01000009.1 Clostridium sp. AF15-49 AF15-49.Scaf9, whole genome shotgun sequence (106130 bp)
Overview 1 RT 1: 34913-42189 bp Neighborhood of RT #1 [34913, 42290] Spr TraC-F-type RVT-GII HNHc PrgI Feature: gene Location: 34913-36682 bp Ori: RGH02670.1 Feature: domain Description: Spr Location: 36311-36659 bp Feature: domain Description: Spr Location: 36311-36659 bp Feature: gene Location: 36686-38128 bp Feature: domain Description: TraC-F-type Location: 36710-37931 bp Feature: domain Description: TraC-F-type Location: 36710-37931 bp Feature: gene Location: 38222-40195 bp Ori: RGH02671.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38558-39296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38558-392 96 bp Feature: domain Description: HNHc Note: nucleases Location: 39851-39989 bp Feature: domain Description: HNHc Note: nucleases Location: 39851-39989 bp Feature: gene Location: 40937-41878 bp Feature: gene Location: 41898-42290 bp Ori: RGH02672.1 Feature: domain Description: PrgI Location: 41919-42189 bp Feature: domain Description: PrgI Location: 41919-42 189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), PrgI (pfam12666)