myRT

myRT report for GCA_003461645.1_ASM346164v1

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Seq: QTXM01000002.1 Alistipes sp. AF14-19 AF14-19.Scaf2, whole genome shotgun sequence (356442 bp)
Overview 1 RT 1: 197751-207213 bp Neighborhood of RT #1 [197751, 207218] YbjD YbjD COG4646 HELICc matK RVT-GII Intron_maturas2 N6_Mtase COG4646 Feature: gene Location: 197751-199379 bp Ori: RGH20036.1 Feature: domain Description: YbjD Location: 197754-197898 bp Feature: domain Description: YbjD Location: 1 97754-1 97898 bp Feature: domain Description: YbjD Location: 198558-199101 bp Feature: domain Description: YbjD Location: 1 98558-1 991 01 bp Feature: gene Location: 199514-202189 bp Feature: domain Description: COG4646 Location: 199517-200492 bp Feature: domain Description: COG4646 Location: 1 9951 7-200492 bp Feature: domain Description: HELICc Location: 200861-201047 bp Feature: domain Description: HELICc Location: 200861 -201 047 bp Feature: gene Location: 202305-204107 bp Ori: RGH20037.1 Feature: domain Description: matK Location: 202374-202461 bp Feature: domain Description: matK Location: 202374-202461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202569-203391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202569-203391 bp Feature: domain Description: Intron_maturas2 Location: 203541-203775 bp Feature: domain Description: Intron_maturas2 Location: 203541 -203775 bp Feature: gene Location: 204114-204569 bp Feature: gene Location: 205338-207218 bp Feature: domain Description: N6_Mtase Location: 205413-206070 bp Feature: domain Description: N6_Mtase Location: 20541 3-206070 bp Feature: domain Description: COG4646 Location: 207003-207213 bp Feature: domain Description: COG4646 Location: 207003-20721 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), N6_Mtase (pfam02384)

Seq: QTXM01000031.1 Alistipes sp. AF14-19 AF14-19.Scaf31, whole genome shotgun sequence (19301 bp)
Overview 1 RT 1: 6698-10697 bp Neighborhood of RT #1 [6698, 10697] Phage_holin_4_1 RVT-DGRs Avd_like Feature: gene Location: 6698-7201 bp Ori: RGH11053.1 Feature: domain Description: Phage_holin_4_1 Location: 6797-7052 bp Feature: domain Description: Phage_holin_4_1 Location: 6797-7052 bp Feature: gene Location: 7198-7416 bp Feature: gene Location: 7436-8833 bp Ori: RGH11055.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7763-8459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7763-8459 bp Feature: gene Location: 8884-9279 bp Ori: RGH11056.1 Feature: domain Description: Avd_like Location: 8905-9217 bp Feature: domain Description: Avd_like Location: 8905-92 17 bp Feature: gene Location: 9351-10697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376)

Seq: QTXM01000001.1 Alistipes sp. AF14-19 AF14-19.Scaf1, whole genome shotgun sequence (522523 bp)
Overview 1 RT 1: 317658-322609 bp Neighborhood of RT #1 [317658, 324153] RVT-DGRs Prophage_tail Prophage_tail Feature: gene Location: 317658-319085 bp Feature: gene Location: 319129-319476 bp Feature: gene Location: 319758-320795 bp Ori: RGH20647.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 319968-320574 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 19968-3 20574 bp Feature: gene Location: 320761-321177 bp Feature: gene Location: 321187-324153 bp Ori: RGH20649.1 Feature: domain Description: Prophage_tail Location: 321541-321742 bp Feature: domain Description: Prophage_tail Location: 3 21541-3 21742 bp Feature: domain Description: Prophage_tail Location: 322363-322609 bp Feature: domain Description: Prophage_tail Location: 3 223 63 -3 22609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Prophage_tail (pfam06605)

Seq: QTXM01000004.1 Alistipes sp. AF14-19 AF14-19.Scaf4, whole genome shotgun sequence (214669 bp)
Overview 1 RT 1: 1-4136 bp Neighborhood of RT #1 [1, 4153] DUF3408 RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 1-386 bp Ori: RGH18986.1 Feature: domain Description: DUF3408 Location: 64-382 bp Feature: domain Description: DUF34 08 Location: 64 -382 bp Feature: gene Location: 843-1130 bp Feature: gene Location: 1676-3484 bp Ori: RGH18814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1940-2762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 0-2762 bp Feature: domain Description: Intron_maturas2 Location: 2858-3137 bp Feature: domain Description: Intron_maturas2 Location: 2858-3137 bp Feature: domain Description: HNHc Note: nucleases Location: 3314-3461 bp Feature: domain Description: HNHc Note: nucleases Location: 3314 -34 61 bp Feature: gene Location: 3471-3752 bp Feature: gene Location: 3737-4153 bp Ori: RGH18816.1 Feature: domain Description: Relaxase Location: 3833-4136 bp Feature: domain Description: Relaxase Location: 3833-4 136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3408 (pfam11888), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: QTXM01000028.1 Alistipes sp. AF14-19 AF14-19.Scaf28, whole genome shotgun sequence (29701 bp)
Overview 1 RT 1: 21189-26810 bp Neighborhood of RT #1 [21189, 26815] Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 21189-23687 bp Ori: RGH11296.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 21192-23676 bp Feature: domain Description: Bac_Flav_CT_G Location: 21192-23676 bp Feature: gene Location: 23692-24024 bp Ori: RGH11304.1 Feature: domain Description: DUF4133 Location: 23746-23974 bp Feature: domain Description: DUF4133 Location: 23746-23974 bp Feature: gene Location: 24084-25901 bp Ori: RGH11297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24348-25170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24348-25 170 bp Feature: domain Description: Intron_maturas2 Location: 25245-25572 bp Feature: domain Description: Intron_maturas2 Location: 25 245 -25 5 72 bp Feature: domain Description: HNHc Note: nucleases Location: 25725-25875 bp Feature: domain Description: HNHc Note: nucleases Location: 25 725 -25 875 bp Feature: gene Location: 26441-26515 bp Feature: gene Location: 26519-26815 bp Ori: RGH11298.1 Feature: domain Description: DUF4134 Location: 26537-26810 bp Feature: domain Description: DUF4134 Location: 265 37-26810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: QTXM01000007.1 Alistipes sp. AF14-19 AF14-19.Scaf7, whole genome shotgun sequence (170463 bp)
Overview 1 RT 1: 64673-68606 bp Neighborhood of RT #1 [64673, 68606] RVT-UG27 Feature: gene Location: 64673-65152 bp Feature: gene Location: 65202-65699 bp Feature: gene Location: 66022-67284 bp Ori: RGH17937.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 66214-66850 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 6 6 214-6 6 850 bp Feature: gene Location: 67277-67945 bp Feature: gene Location: 67959-68606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27