myRT

myRT report for GCA_003461655.1_ASM346165v1

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Seq: QTXN01000003.1 Ruminococcus sp. AF12-5 AF12-5.Scaf3, whole genome shotgun sequence (403478 bp)
Overview 1 RT 1: 254440-261542 bp Neighborhood of RT #1 [254440, 261565] YtfP RVT-UG24 PDDEXK_2 HTH_XRE Feature: gene Location: 254440-255594 bp Ori: RGH17748.1 Feature: domain Description: YtfP Location: 254692-254947 bp Feature: domain Description: YtfP Location: 254692-254947 bp Feature: gene Location: 255773-256294 bp Feature: gene Location: 256298-259831 bp Ori: RGH17750.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 256844-257321 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 256844-257321 bp Feature: gene Location: 260178-261131 bp Feature: domain Description: PDDEXK_2 Location: 260271-260925 bp Feature: domain Description: PDDEXK_2 Location: 260271 -260925 bp Feature: gene Location: 261263-261565 bp Ori: RGH17751.1 Feature: domain Description: HTH_XRE Location: 261374-261542 bp Feature: domain Description: HTH_XRE Location: 261 374-261 542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtfP (COG2105), RVT-UG24, PDDEXK_2 (pfam12784), HTH_XRE (smart00530)

Seq: QTXN01000002.1 Ruminococcus sp. AF12-5 AF12-5.Scaf2, whole genome shotgun sequence (499243 bp)
Overview 1 RT 1: 119203-123081 bp 2 RT 2: 176079-179499 bp Neighborhood of RT #1 [119203, 123081] RVT-DGRs Neighborhood of RT #2 [176079, 179499] ThiF RVT-Retrons Feature: gene Location: 119203-119757 bp Feature: gene Location: 119770-120042 bp Feature: gene Location: 119957-121219 bp Ori: RGH18283.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 120176-120893 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 0176-12 0893 bp Feature: gene Location: 121522-122073 bp Feature: gene Location: 122149-123081 bp Feature: gene Location: 176079-176750 bp Ori: RGH18332.1 Feature: domain Description: ThiF Location: 176127-176694 bp Feature: domain Description: ThiF Location: 17612 7-176694 bp Feature: gene Location: 176753-176959 bp Feature: gene Location: 177277-178416 bp Ori: RGH18334.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177538-178132 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177538-178132 bp Feature: gene Location: 178730-178930 bp Feature: gene Location: 179041-179499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ThiF (pfam00899), RVT-Retrons

Seq: QTXN01000001.1 Ruminococcus sp. AF12-5 AF12-5.Scaf1, whole genome shotgun sequence (568155 bp)
Overview 1 RT 1: 66729-72913 bp 2 RT 2: 552131-555274 bp Neighborhood of RT #1 [66729, 72927] PBP2_BvgS_D2 PRK09959 TMAO_torS RVT-GII MATE_like_8 AraC_binding AraC Neighborhood of RT #2 [552131, 555447] Maff2 TraG-D_C RVT-GII Intron_maturas2 TnpB_IS66 HTH_Tnp_1 Feature: gene Location: 66729-69557 bp Ori: RGH19052.1 Feature: domain Description: PBP2_BvgS_D2 Location: 66873-67212 bp Feature: domain Description: PBP2_BvgS_D2 Location: 66873 -67212 bp Feature: domain Description: PRK09959 Location: 67341-68307 bp Feature: domain Description: PRK09959 Location: 673 41-683 07 bp Feature: domain Description: TMAO_torS Location: 68400-69546 bp Feature: domain Description: TMAO_torS Location: 68400-69546 bp Feature: gene Location: 69609-69743 bp Feature: gene Location: 70066-70443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70357-70444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703 57-70444 bp Feature: gene Location: 70686-72020 bp Ori: RGH19053.1 Feature: domain Description: MATE_like_8 Location: 70701-71994 bp Feature: domain Description: MATE_like_8 Location: 70701-71994 bp Feature: gene Location: 72061-72927 bp Ori: RGH19054.1 Feature: domain Description: AraC_binding Location: 72124-72514 bp Feature: domain Description: AraC_binding Location: 72124-72514 bp Feature: domain Description: AraC Location: 72586-72913 bp Feature: domain Description: AraC Location: 72586-72913 bp Feature: gene Location: 552131-552271 bp Ori: RGH19557.1 Feature: domain Description: Maff2 Location: 552137-552260 bp Feature: domain Description: Maff2 Location: 55213 7-552260 bp Feature: gene Location: 552554-552952 bp Feature: domain Description: TraG-D_C Location: 552557-552740 bp Feature: domain Description: TraG-D_C Location: 552557-552740 bp Feature: gene Location: 553060-554841 bp Ori: RGH19516.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553291-554122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553 291-554122 bp Feature: domain Description: Intron_maturas2 Location: 554200-554503 bp Feature: domain Description: Intron_maturas2 Location: 554200-554503 bp Feature: gene Location: 554733-555077 bp Ori: RGH19517.1 Feature: domain Description: TnpB_IS66 Location: 554763-555018 bp Feature: domain Description: TnpB_IS66 Location: 554763 -555018 bp Feature: gene Location: 555070-555447 bp Ori: RGH19518.1 Feature: domain Description: HTH_Tnp_1 Location: 555106-555274 bp Feature: domain Description: HTH_Tnp_1 Location: 555106-555274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_BvgS_D2 (cd13707), PRK09959 (acid-sensing system histidine kinase EvgS), TMAO_torS (TIGR02956), RVT-GII, MATE_like_8 (cd13134), AraC_binding (pfam02311), AraC (COG2207), Maff2 (pfam12750), TraG-D_C (pfam12696), Intron_maturas2 (pfam01348)
TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527)