myRT

myRT report for GCA_003461705.1_ASM346170v1

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Seq: QTXP01000007.1 Firmicutes bacterium AF12-30 AF12-30.Scaf7, whole genome shotgun sequence (133558 bp)
Overview 1 RT 1: 3697-8542 bp Neighborhood of RT #1 [3697, 8577] gldA RVT_N RVT-GII GIIM GIIM LytT Feature: gene Location: 3697-4785 bp Ori: RGH23638.1 Feature: domain Description: gldA Location: 3700-4777 bp Feature: domain Description: gldA Location: 3700-4777 bp Feature: gene Location: 4896-4964 bp Feature: gene Location: 5820-7286 bp Ori: RGH23639.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5838-6081 bp Feature: domain Description: RVT_N Location: 5838-6081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6141-6783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 41 -6783 bp Feature: domain Description: GIIM Note: maturase Location: 6834-7068 bp Feature: domain Description: GIIM Note: maturase Location: 6834-7068 bp Feature: gene Location: 7386-7790 bp Ori: RGH23640.1 Feature: domain Description: GIIM Note: maturase Location: 7437-7599 bp Feature: domain Description: GIIM Note: maturase Location: 7437-7599 bp Feature: gene Location: 7861-8577 bp Ori: RGH23641.1 Feature: domain Description: LytT Location: 7864-8542 bp Feature: domain Description: LytT Location: 7864-8542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gldA (PRK09423), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LytT (COG3279)

Seq: QTXP01000001.1 Firmicutes bacterium AF12-30 AF12-30.Scaf1, whole genome shotgun sequence (291838 bp)
Overview 1 RT 1: 66410-72013 bp Neighborhood of RT #1 [66410, 72018] PRK03202 DeoR RVT-GII sorbose_phosphate_red Feature: gene Location: 66410-67483 bp Ori: RGH26921.1 Feature: domain Description: PRK03202 Location: 66416-67463 bp Feature: domain Description: PRK032 02 Location: 66416-67463 bp Feature: gene Location: 67750-68739 bp Ori: RGH26922.1 Feature: domain Description: DeoR Location: 67780-68737 bp Feature: domain Description: DeoR Location: 67780-68737 bp Feature: gene Location: 68824-70115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69142-69592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69142 -69592 bp Feature: gene Location: 70223-70369 bp Feature: gene Location: 70762-72018 bp Ori: RGH26924.1 Feature: domain Description: sorbose_phosphate_red Location: 70765-72013 bp Feature: domain Description: sorbose_phosphate_red Location: 70765-72 013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03202 (ATP-dependent 6-phosphofructokinase), DeoR (COG2390), RVT-GII, sorbose_phosphate_red (cd08238)

Seq: QTXP01000002.1 Firmicutes bacterium AF12-30 AF12-30.Scaf2, whole genome shotgun sequence (239440 bp)
Overview 1 RT 1: 21169-25785 bp Neighborhood of RT #1 [21169, 25838] RES RVT-UNC YodL LPD18 DUF4316 TTRAP Feature: gene Location: 21169-21375 bp Feature: gene Location: 21771-22934 bp Ori: RGH26513.1 Feature: domain Description: RES Location: 22023-22386 bp Feature: domain Description: RES Location: 22023 -223 86 bp Feature: gene Location: 22991-24538 bp Ori: RGH26514.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 23414-23696 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 23 414-23 696 bp Feature: gene Location: 24670-25590 bp Ori: RGH26515.1 Feature: domain Description: YodL Location: 24685-24982 bp Feature: domain Description: YodL Location: 24685-24982 bp Feature: domain Description: LPD18 Location: 25003-25255 bp Feature: domain Description: LPD18 Location: 25003 -25255 bp Feature: domain Description: DUF4316 Location: 25372-25501 bp Feature: domain Description: DUF43 16 Location: 253 72-25501 bp Feature: gene Location: 25587-25838 bp Ori: RGH26516.1 Feature: domain Description: TTRAP Location: 25611-25785 bp Feature: domain Description: TTRAP Location: 25611-25785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), RVT-UG12/RVT-UG14/RVT-AbiP2/RVT-UG8(RVT-UNC), YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195), TTRAP (pfam14203)