myRT

myRT report for GCA_003461785.1_ASM346178v1

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Seq: QTXU01000002.1 Ruminococcus sp. AM43-6 AM43-6.Scaf2, whole genome shotgun sequence (353077 bp)
Overview 1 RT 1: 2560-14221 bp Neighborhood of RT #1 [2560, 14253] AAA_22 RVT-UG3 RVT-UG8 DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3666 DDE_Tnp_1 DDE_Tnp_1_6 Feature: gene Location: 2560-7299 bp Ori: RGH37401.1 Feature: domain Description: AAA_22 Location: 6208-6622 bp Feature: domain Description: AAA_22 Location: 6208-6622 bp Feature: gene Location: 7306-8379 bp Feature: gene Location: 8575-9939 bp Ori: RGH37403.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 8887-9388 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 8887-9388 bp Feature: gene Location: 10126-12114 bp Ori: RGH37404.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 10657-11098 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 0657-1 1 098 bp Feature: gene Location: 12189-12584 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12192-12408 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 21 92-1 2408 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12426-12549 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 2426-1 2549 bp Feature: gene Location: 12661-14253 bp Ori: RGH37405.1 Feature: domain Description: COG3666 Location: 12706-13174 bp Feature: domain Description: COG3666 Location: 1 2706-1 31 74 bp Feature: domain Description: DDE_Tnp_1 Location: 13468-13792 bp Feature: domain Description: DDE_Tnp_1 Location: 1 3468-1 3792 bp Feature: domain Description: DDE_Tnp_1_6 Location: 13849-14221 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 3849-1 4221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_22 (pfam13401), RVT-UG3, RVT-UG8, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_6 (pfam13751)

Seq: QTXU01000024.1 Ruminococcus sp. AM43-6 AM43-6.Scaf24, whole genome shotgun sequence (38626 bp)
Overview 1 RT 1: 34311-38423 bp Neighborhood of RT #1 [34311, 38626] LytT RVT-GII SLR SLR SLR SLR Feature: gene Location: 34311-35168 bp Ori: RGH34839.1 Feature: domain Description: LytT Location: 34452-35142 bp Feature: domain Description: LytT Location: 34452 -35142 bp Feature: gene Location: 35284-35475 bp Feature: gene Location: 35482-36020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35500-35569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35500-35569 bp Feature: gene Location: 36524-38626 bp Ori: RGH34841.1 Feature: domain Description: SLR Location: 37205-37376 bp Feature: domain Description: SLR Location: 372 05-37376 bp Feature: domain Description: SLR Location: 37415-37724 bp Feature: domain Description: SLR Location: 37415-3772 4 bp Feature: domain Description: SLR Location: 37751-37973 bp Feature: domain Description: SLR Location: 37751-37973 bp Feature: domain Description: SLR Location: 38042-38423 bp Feature: domain Description: SLR Location: 38042 -3842 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), RVT-GII, SLR (sd00010)

Seq: QTXU01000016.1 Ruminococcus sp. AM43-6 AM43-6.Scaf16, whole genome shotgun sequence (68931 bp)
Overview 1 RT 1: 55502-63877 bp Neighborhood of RT #1 [55502, 63885] CcmA RVT-Retrons RecQ PRK12553 Feature: gene Location: 55502-56137 bp Ori: RGH35391.1 Feature: domain Description: CcmA Location: 55508-56126 bp Feature: domain Description: CcmA Location: 55508-56126 bp Feature: gene Location: 56139-56867 bp Feature: gene Location: 57503-58480 bp Ori: RGH35393.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57665-58214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57665-58214 bp Feature: gene Location: 58944-62420 bp Ori: RGH35394.1 Feature: domain Description: RecQ Location: 59022-60483 bp Feature: domain Description: RecQ Location: 59022-60483 bp Feature: gene Location: 63142-63885 bp Ori: RGH35395.1 Feature: domain Description: PRK12553 Location: 63301-63877 bp Feature: domain Description: PRK12553 Location: 63 3 01-63 877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-Retrons, RecQ (COG0514), PRK12553 (ATP-dependent Clp protease proteolytic subunit; Reviewed)