myRT

myRT report for GCA_003461825.1_ASM346182v1

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Seq: QTXV01000048.1 Prevotella sp. AM42-24 AM42-24.Scaf48, whole genome shotgun sequence (25362 bp)
Overview 1 RT 1: 7870-13159 bp Neighborhood of RT #1 [7870, 13159] ycfP DUF1653 SR_ResInv RVT-GII GIIM Feature: gene Location: 7870-8673 bp Ori: RGH38547.1 Feature: domain Description: ycfP Location: 7876-8251 bp Feature: domain Description: ycfP Location: 7876-8251 bp Feature: domain Description: DUF1653 Location: 8479-8656 bp Feature: domain Description: DUF1 653 Location: 8479-8656 bp Feature: gene Location: 8696-9325 bp Ori: RGH38548.1 Feature: domain Description: SR_ResInv Location: 8705-8990 bp Feature: domain Description: SR_ResInv Location: 8705-8990 bp Feature: gene Location: 9513-10775 bp Ori: RGH38549.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9717-10374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 971 7-1 0374 bp Feature: domain Description: GIIM Note: maturase Location: 10455-10680 bp Feature: domain Description: GIIM Note: maturase Location: 1 0455-1 0680 bp Feature: gene Location: 11645-12691 bp Feature: gene Location: 12704-13159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ycfP (COG3150), DUF1653 (pfam07866), SR_ResInv (cd03768), RVT-GII, GIIM (pfam08388)

Seq: QTXV01000054.1 Prevotella sp. AM42-24 AM42-24.Scaf54, whole genome shotgun sequence (19581 bp)
Overview 1 RT 1: 4224-9256 bp Neighborhood of RT #1 [4224, 9256] LRR_AMN1 RVT-DGRs Feature: gene Location: 4224-6683 bp Ori: RGH37868.1 Feature: domain Description: LRR_AMN1 Location: 4359-4761 bp Feature: domain Description: LRR_AMN1 Location: 4359-4761 bp Feature: gene Location: 6779-7021 bp Feature: gene Location: 7096-8397 bp Ori: RGH37870.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7312-7903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7312 -7903 bp Feature: gene Location: 8397-8879 bp Feature: gene Location: 9008-9256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_AMN1 (sd00034), RVT-DGRs

Seq: QTXV01000053.1 Prevotella sp. AM42-24 AM42-24.Scaf53, whole genome shotgun sequence (20994 bp)
Overview 1 RT 1: 16126-20994 bp Neighborhood of RT #1 [16126, 20994] RVT-DGRs Feature: gene Location: 16126-16371 bp Feature: gene Location: 16482-16961 bp Feature: gene Location: 16962-18263 bp Ori: RGH37890.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17178-17769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17178-17769 bp Feature: gene Location: 18662-20994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTXV01000061.1 Prevotella sp. AM42-24 AM42-24.Scaf61, whole genome shotgun sequence (17764 bp)
Overview 1 RT 1: 6905-17067 bp Neighborhood of RT #1 [6905, 17120] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII YkfC NGN_SP_UpxY KOW_NusG Feature: gene Location: 6905-7354 bp Ori: RGH37021.1 Feature: domain Description: DUF1896 Location: 6926-7349 bp Feature: domain Description: DUF1896 Location: 6926-734 9 bp Feature: gene Location: 7341-12113 bp Ori: RGH37022.1 Feature: domain Description: N6_Mtase Location: 7653-8346 bp Feature: domain Description: N6_Mtase Location: 7653-834 6 bp Feature: domain Description: COG4646 Location: 9735-11733 bp Feature: domain Description: COG4 64 6 Location: 9735-11733 bp Feature: gene Location: 12770-14455 bp Ori: RGH37027.1 Gene: ltrA Feature: domain Description: RVT_N Location: 12842-13085 bp Feature: domain Description: RVT_N Location: 1284 2-13085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13130-13778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13130-13778 bp Feature: domain Description: YkfC Location: 13988-14078 bp Feature: domain Description: YkfC Location: 13988-14 078 bp Feature: gene Location: 14457-15530 bp Feature: gene Location: 16392-17120 bp Ori: RGH37023.1 Feature: domain Description: NGN_SP_UpxY Location: 16593-16902 bp Feature: domain Description: NGN_SP_UpxY Location: 16593-16902 bp Feature: domain Description: KOW_NusG Location: 16959-17067 bp Feature: domain Description: KOW_NusG Location: 16959-17067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: QTXV01000001.1 Prevotella sp. AM42-24 AM42-24.Scaf1, whole genome shotgun sequence (206439 bp)
Overview 1 RT 1: 183178-187682 bp Neighborhood of RT #1 [183178, 187684] McrC RVT-GII GIIM OMP_b-brl Feature: gene Location: 183178-183432 bp Feature: gene Location: 183422-184750 bp Ori: RGH46759.1 Feature: domain Description: McrC Location: 183587-184736 bp Feature: domain Description: McrC Location: 1835 87-184736 bp Feature: gene Location: 185318-186655 bp Ori: RGH46760.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185519-186137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185 5 19-186137 bp Feature: domain Description: GIIM Note: maturase Location: 186194-186404 bp Feature: domain Description: GIIM Note: maturase Location: 186194-186404 bp Feature: gene Location: 186818-187063 bp Feature: gene Location: 187109-187684 bp Ori: RGH46762.1 Feature: domain Description: OMP_b-brl Location: 187130-187682 bp Feature: domain Description: OMP_b-brl Location: 187130-187682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrC (COG4268), RVT-GII, GIIM (pfam08388), OMP_b-brl (pfam13505)

Seq: QTXV01000026.1 Prevotella sp. AM42-24 AM42-24.Scaf26, whole genome shotgun sequence (46151 bp)
Overview 1 RT 1: 43115-45434 bp Neighborhood of RT #1 [43115, 46036] PRK15057 AbiH RVT-UG28b Feature: gene Location: 43115-43273 bp Feature: domain Description: PRK15057 Location: 43133-43271 bp Feature: domain Description: PRK15057 Location: 43133-43271 bp Feature: gene Location: 43783-44151 bp Ori: RGH41160.1 Feature: domain Description: AbiH Location: 43834-44032 bp Feature: domain Description: AbiH Location: 43834-44032 bp Feature: gene Location: 44258-46036 bp Ori: RGH41161.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 44690-45434 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 446 90-45434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), AbiH (pfam14253), RVT-UG28b