myRT

myRT report for GCA_003461855.1_ASM346185v1

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Seq: QTXX01000021.1 Ruminococcus sp. AM41-2AC AM41-2AC.Scaf21, whole genome shotgun sequence (31610 bp)
Overview 1 RT 1: 12349-16523 bp Neighborhood of RT #1 [12349, 18841] VirD4 TraG-D_C RVT-GII GIIM DUF1533 DUF1533 DUF1533 Feature: gene Location: 12349-13152 bp Ori: RGH40139.1 Feature: domain Description: VirD4 Location: 12370-12547 bp Feature: domain Description: VirD4 Location: 1 2370-1 2547 bp Feature: gene Location: 13112-13459 bp Ori: RGH40140.1 Feature: domain Description: TraG-D_C Location: 13202-13448 bp Feature: domain Description: TraG-D_C Location: 1 3202-1 3448 bp Feature: gene Location: 13534-14823 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13825-14452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3825-1 4452 bp Feature: domain Description: GIIM Note: maturase Location: 14539-14764 bp Feature: domain Description: GIIM Note: maturase Location: 1 4539-1 4764 bp Feature: gene Location: 14915-15109 bp Feature: gene Location: 15413-18841 bp Ori: RGH40142.1 Feature: domain Description: DUF1533 Location: 15680-15893 bp Feature: domain Description: DUF1 533 Location: 1 5680-1 5893 bp Feature: domain Description: DUF1533 Location: 16304-16382 bp Feature: domain Description: DUF1 533 Location: 1 6304-1 6382 bp Feature: domain Description: DUF1533 Location: 16481-16523 bp Feature: domain Description: DUF1 533 Location: 1 6481 -1 6523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), TraG-D_C (pfam12696), RVT-GII, GIIM (pfam08388), DUF1533 (pfam07550)

Seq: QTXX01000043.1 Ruminococcus sp. AM41-2AC AM41-2AC.Scaf43, whole genome shotgun sequence (1721 bp)
Overview 1 RT 1: 1-1695 bp Neighborhood of RT #1 [1, 1721] RVT-GII rSAM_mob_pairB Feature: gene Location: 1-496 bp Ori: RGH38731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 56-496 bp Feature: gene Location: 586-765 bp Feature: gene Location: 1131-1721 bp Ori: RGH38732.1 Feature: domain Description: rSAM_mob_pairB Location: 1134-1695 bp Feature: domain Description: rSAM_mob_pairB Location: 1134-1695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rSAM_mob_pairB (TIGR04470)

Seq: QTXX01000005.1 Ruminococcus sp. AM41-2AC AM41-2AC.Scaf5, whole genome shotgun sequence (209217 bp)
Overview 1 RT 1: 108090-113017 bp Neighborhood of RT #1 [108090, 113017] RVT-DGRs SMC_prok_B Feature: gene Location: 108090-108296 bp Feature: gene Location: 108289-108645 bp Feature: gene Location: 108593-109819 bp Ori: RGH43526.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108878-109541 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108878-109541 bp Feature: gene Location: 110207-112516 bp Ori: RGH43527.1 Feature: domain Description: SMC_prok_B Location: 110276-110933 bp Feature: domain Description: SMC_prok_B Location: 110276-11093 3 bp Feature: gene Location: 112661-113017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, SMC_prok_B (TIGR02168)

Seq: QTXX01000002.1 Ruminococcus sp. AM41-2AC AM41-2AC.Scaf2, whole genome shotgun sequence (407896 bp)
Overview 1 RT 1: 17959-29056 bp Neighborhood of RT #1 [17959, 29085] IscR HDGYP RVT-GII SpaA CollagenBindB SpaA IscR HDGYP Feature: gene Location: 17959-19419 bp Ori: RGH44978.1 Feature: domain Description: IscR Location: 17962-18364 bp Feature: domain Description: IscR Location: 17962-18364 bp Feature: domain Description: HDGYP Location: 18664-19408 bp Feature: domain Description: HDGYP Location: 18664 -194 08 bp Feature: gene Location: 19551-19865 bp Feature: gene Location: 20398-20871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20644-20866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2064 4 -20866 bp Feature: gene Location: 21493-27624 bp Ori: RGH44980.1 Feature: domain Description: SpaA Location: 25954-26149 bp Feature: domain Description: SpaA Location: 25954 -2614 9 bp Feature: domain Description: CollagenBindB Location: 26323-26551 bp Feature: domain Description: CollagenBindB Location: 26323-26551 bp Feature: domain Description: SpaA Location: 26740-26995 bp Feature: domain Description: SpaA Location: 2674 0-26995 bp Feature: gene Location: 27637-29085 bp Ori: RGH44981.1 Feature: domain Description: IscR Location: 27640-28039 bp Feature: domain Description: IscR Location: 2764 0-28039 bp Feature: domain Description: HDGYP Location: 28258-29056 bp Feature: domain Description: HDGYP Location: 28258-29056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, SpaA (pfam17802), CollagenBindB (cl15753)

Seq: QTXX01000003.1 Ruminococcus sp. AM41-2AC AM41-2AC.Scaf3, whole genome shotgun sequence (343144 bp)
Overview 1 RT 1: 244622-248149 bp Neighborhood of RT #1 [244622, 248238] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 244622-245764 bp Ori: RGH44550.1 Feature: domain Description: PHA00653 Location: 244745-245762 bp Feature: domain Description: PHA0065 3 Location: 244745 -245 762 bp Feature: gene Location: 245805-246161 bp Ori: RGH44551.1 Gene: avd Feature: domain Description: Avd_like Location: 245835-246141 bp Feature: domain Description: Avd_like Location: 245 835 -246141 bp Feature: gene Location: 246488-247549 bp Ori: RGH44552.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 246725-247346 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 246725 -247346 bp Feature: gene Location: 247574-247753 bp Feature: gene Location: 247750-248238 bp Ori: RGH44554.1 Feature: domain Description: Phage_holin_4_1 Location: 247789-248149 bp Feature: domain Description: Phage_holin_4_1 Location: 247789-248149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: QTXX01000045.1 Ruminococcus sp. AM41-2AC AM41-2AC.Scaf45, whole genome shotgun sequence (1058 bp)
Overview 1 RT 1: 93-1058 bp Neighborhood of RT #1 [93, 1058] RVT-GII Feature: gene Location: 93-584 bp Ori: RGH38632.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96 -234 bp Feature: gene Location: 595-1058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII