myRT

myRT report for GCA_003462005.1_ASM346200v1

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Seq: QTYE01000029.1 Ruminococcus sp. AM33-14 AM33-14.Scaf29, whole genome shotgun sequence (30306 bp)
Overview 1 RT 1: 26588-30306 bp Neighborhood of RT #1 [26588, 30306] AzlD Endonuclea_NS_2 RVT-GII Feature: gene Location: 26588-26911 bp Feature: domain Description: AzlD Location: 26597-26900 bp Feature: domain Description: AzlD Location: 26597-26900 bp Feature: gene Location: 27025-28047 bp Feature: domain Description: Endonuclea_NS_2 Location: 27307-27688 bp Feature: domain Description: Endonuclea_NS_2 Location: 27307-27688 bp Feature: gene Location: 28336-29631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28591-29281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28591 -29281 bp Feature: gene Location: 29721-29900 bp Feature: gene Location: 30122-30306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AzlD (pfam05437), Endonuclea_NS_2 (pfam13930), RVT-GII

Seq: QTYE01000025.1 Ruminococcus sp. AM33-14 AM33-14.Scaf25, whole genome shotgun sequence (34308 bp)
Overview 1 RT 1: 27948-33849 bp Neighborhood of RT #1 [27948, 34265] DUF1533 DUF1533 DUF1533 RVT-GII GIIM TraG-D_C Feature: gene Location: 27948-31376 bp Feature: domain Description: DUF1533 Location: 28215-28428 bp Feature: domain Description: DUF1533 Location: 2 82 15-2 842 8 bp Feature: domain Description: DUF1533 Location: 28839-28917 bp Feature: domain Description: DUF1533 Location: 2 8839-2 8917 bp Feature: domain Description: DUF1533 Location: 29016-29058 bp Feature: domain Description: DUF1533 Location: 2 9016-2 9058 bp Feature: gene Location: 31680-31940 bp Feature: gene Location: 32032-33321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32323-32956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 32 3-32 956 bp Feature: domain Description: GIIM Note: maturase Location: 33037-33262 bp Feature: domain Description: GIIM Note: maturase Location: 33037-332 62 bp Feature: gene Location: 33396-34265 bp Feature: domain Description: TraG-D_C Location: 33486-33849 bp Feature: domain Description: TraG-D_C Location: 33486-33849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1533 (pfam07550), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QTYE01000006.1 Ruminococcus sp. AM33-14 AM33-14.Scaf6, whole genome shotgun sequence (144679 bp)
Overview 1 RT 1: 114176-119069 bp Neighborhood of RT #1 [114176, 119069] RVT-DGRs Smc Feature: gene Location: 114176-114490 bp Feature: gene Location: 114888-115154 bp Feature: gene Location: 115151-116281 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 115355-116018 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1153 55-116018 bp Feature: gene Location: 116689-118830 bp Feature: domain Description: Smc Location: 116758-117460 bp Feature: domain Description: Smc Location: 116758-117460 bp Feature: gene Location: 118830-119069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Smc (COG1196)

Seq: QTYE01000012.1 Ruminococcus sp. AM33-14 AM33-14.Scaf12, whole genome shotgun sequence (104675 bp)
Overview 1 RT 1: 27847-32541 bp Neighborhood of RT #1 [27847, 32837] PRK05362 RVT-GII GIIM HD_3 DUF2207 Feature: gene Location: 27847-29037 bp Feature: domain Description: PRK05362 Location: 27862-29032 bp Feature: domain Description: PRK05362 Location: 27862-29032 bp Feature: gene Location: 29248-29427 bp Feature: gene Location: 29515-30927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29866-30487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29866-304 87 bp Feature: domain Description: GIIM Note: maturase Location: 30538-30748 bp Feature: domain Description: GIIM Note: maturase Location: 30538-3074 8 bp Feature: gene Location: 31124-31711 bp Feature: domain Description: HD_3 Location: 31169-31646 bp Feature: domain Description: HD_3 Location: 31169-3164 6 bp Feature: gene Location: 31830-32837 bp Feature: domain Description: DUF2207 Location: 32208-32541 bp Feature: domain Description: DUF2207 Location: 32208-3254 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05362 (phosphopentomutase; Provisional), RVT-GII, GIIM (pfam08388), HD_3 (pfam13023), DUF2207 (pfam09972)