myRT

myRT report for GCA_003462285.1_ASM346228v1

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Seq: QTYS01000005.1 Bacteroides sp. AM25-34 AM25-34.Scaf5, whole genome shotgun sequence (152448 bp)
Overview 1 RT 1: 90187-94201 bp Neighborhood of RT #1 [90187, 94278] RVT-DGRs Phage_Mu_F LPD3 Feature: gene Location: 90187-90429 bp Feature: gene Location: 90628-91113 bp Feature: gene Location: 91110-92411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91320-91917 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91 320-91 91 7 bp Feature: gene Location: 92793-93026 bp Feature: gene Location: 93124-94278 bp Feature: domain Description: Phage_Mu_F Location: 93367-93652 bp Feature: domain Description: Phage_Mu_F Location: 93367-93652 bp Feature: domain Description: LPD3 Location: 93928-94201 bp Feature: domain Description: LPD3 Location: 93928-94201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233), LPD3 (pfam18798)

Seq: QTYS01000029.1 Bacteroides sp. AM25-34 AM25-34.Scaf29, whole genome shotgun sequence (64414 bp)
Overview 1 RT 1: 145-4540 bp 2 RT 2: 28989-35540 bp Neighborhood of RT #1 [145, 4540] RVT-GII Intron_maturas2 Toprim_2 Neighborhood of RT #2 [28989, 35773] AbiEii TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Feature: gene Location: 145-1953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-12 31 bp Feature: domain Description: Intron_maturas2 Location: 1300-1609 bp Feature: domain Description: Intron_maturas2 Location: 1300-1609 bp Feature: gene Location: 1943-2854 bp Feature: domain Description: Toprim_2 Location: 2477-2765 bp Feature: domain Description: Toprim_2 Location: 2 477-2 765 bp Feature: gene Location: 3137-4540 bp Feature: gene Location: 28989-30005 bp Feature: domain Description: AbiEii Location: 29100-29922 bp Feature: domain Description: AbiEii Location: 2 9100-2 992 2 bp Feature: gene Location: 30051-31391 bp Feature: domain Description: TraG-D_C Location: 30765-31098 bp Feature: domain Description: TraG-D_C Location: 30765-31098 bp Feature: gene Location: 31483-33162 bp Feature: RT Description: RVT_N Location: 31534-31777 bp Feature: RT Description: RVT_N Location: 31534-31777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31822-32470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3182 2 -32 470 bp Feature: domain Description: GIIM Note: maturase Location: 32521-32755 bp Feature: domain Description: GIIM Note: maturase Location: 32 52 1-32 755 bp Feature: gene Location: 33818-34486 bp Feature: domain Description: YWFCY Location: 33824-34001 bp Feature: domain Description: YWFCY Location: 3382 4-34001 bp Feature: gene Location: 34505-35773 bp Feature: domain Description: Relaxase Location: 34694-35135 bp Feature: domain Description: Relaxase Location: 34694-35135 bp Feature: domain Description: Relaxase Location: 35303-35540 bp Feature: domain Description: Relaxase Location: 35303-35540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), AbiEii (pfam08843), TraG-D_C (pfam12696), RVT_N (pfam13655), GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: QTYS01000034.1 Bacteroides sp. AM25-34 AM25-34.Scaf34, whole genome shotgun sequence (49489 bp)
Overview 1 RT 1: 5535-11520 bp Neighborhood of RT #1 [5535, 11789] TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Feature: gene Location: 5535-5930 bp Feature: gene Location: 6046-7251 bp Feature: domain Description: TraG-D_C Location: 6628-6961 bp Feature: domain Description: TraG-D_C Location: 6628-6961 bp Feature: gene Location: 7256-8908 bp Feature: RT Description: RVT_N Location: 7310-7553 bp Feature: RT Description: RVT_N Location: 73 10-7553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7598-8246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7598-8246 bp Feature: domain Description: GIIM Note: maturase Location: 8300-8531 bp Feature: domain Description: GIIM Note: maturase Location: 83 00-853 1 bp Feature: gene Location: 9545-10468 bp Feature: domain Description: YWFCY Location: 9551-9728 bp Feature: domain Description: YWFCY Location: 9551-9728 bp Feature: gene Location: 10491-11789 bp Feature: domain Description: Relaxase Location: 10668-10959 bp Feature: domain Description: Relaxase Location: 10668-10959 bp Feature: domain Description: Relaxase Location: 11268-11520 bp Feature: domain Description: Relaxase Location: 11268-11520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)