myRT

myRT report for GCA_003462365.1_ASM346236v1

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Seq: QTYW01000003.1 Roseburia sp. TF10-5 TF10-5.Scaf3, whole genome shotgun sequence (275472 bp)
Overview 1 RT 1: 243699-247204 bp Neighborhood of RT #1 [243699, 247305] SnoaL_2 RVT-GII DUF3847 Feature: gene Location: 243699-244118 bp Ori: RGI16102.1 Feature: domain Description: SnoaL_2 Location: 243732-244023 bp Feature: domain Description: SnoaL_2 Location: 243732-244023 bp Feature: gene Location: 244351-244530 bp Feature: gene Location: 244620-245915 bp Ori: RGI16104.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244875-245565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244875-245565 bp Feature: gene Location: 246285-246809 bp Feature: gene Location: 246937-247305 bp Ori: RGI16106.1 Feature: domain Description: DUF3847 Location: 246955-247204 bp Feature: domain Description: DUF3847 Location: 246955-247204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_2 (pfam12680), RVT-GII, DUF3847 (pfam12958)

Seq: QTYW01000017.1 Roseburia sp. TF10-5 TF10-5.Scaf17, whole genome shotgun sequence (74501 bp)
Overview 1 RT 1: 14392-18307 bp 2 RT 2: 54660-65488 bp Neighborhood of RT #1 [14392, 18307] AE_Prim_S_like RVT-UG10 DDE_Tnp_1 Neighborhood of RT #2 [54660, 65493] AAA-ATPase_like PDDEXK_9 RVT-GII BID_2 BID_2 FGAM-synthase Feature: gene Location: 14392-16983 bp Ori: RGI10799.1 Feature: domain Description: AE_Prim_S_like Location: 14515-14947 bp Feature: domain Description: AE_Prim_S_like Location: 14515-14947 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 15778-16417 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 15778-16417 bp Feature: gene Location: 17143-18129 bp Ori: RGI10800.1 Feature: domain Description: DDE_Tnp_1 Location: 17428-17914 bp Feature: domain Description: DDE_Tnp_1 Location: 1742 8-17914 bp Feature: gene Location: 18047-18307 bp Feature: gene Location: 54660-55442 bp Feature: gene Location: 55789-57492 bp Ori: RGI10833.1 Feature: domain Description: AAA-ATPase_like Location: 55813-56701 bp Feature: domain Description: AAA-ATPase_like Location: 55813-56701 bp Feature: domain Description: PDDEXK_9 Location: 57175-57481 bp Feature: domain Description: PDDEXK_9 Location: 57175-57481 bp Feature: gene Location: 57736-58299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57955-58297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57955-582 97 bp Feature: gene Location: 58618-61131 bp Ori: RGI10834.1 Feature: domain Description: BID_2 Location: 58711-58933 bp Feature: domain Description: BID_2 Location: 58711-58933 bp Feature: domain Description: BID_2 Location: 58999-59212 bp Feature: domain Description: BID_2 Location: 58999-592 12 bp Feature: gene Location: 61717-65493 bp Ori: RGI10835.1 Feature: domain Description: FGAM-synthase Location: 61732-65488 bp Feature: domain Description: FGAM-synthase Location: 61732 -65488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S_like (cl01287), RVT-UG10, DDE_Tnp_1 (pfam01609), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, BID_2 (smart00635), FGAM-synthase (TIGR01857)