myRT

myRT report for GCA_003462465.1_ASM346246v1

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Seq: QTZB01000015.1 Ruminococcus sp. OM08-13AT OM08-13AT.Scaf15, whole genome shotgun sequence (106685 bp)
Overview 1 RT 1: 79109-94656 bp Neighborhood of RT #1 [79109, 94754] ArdC LPD28 YodL LPD18 DUF3849 LPD16 RVT_N RVT-GII GIIM AdoMet_MTases COG4646 KOG1000 PhdYeFM_antitox Feature: gene Location: 79109-83851 bp Ori: RGI25345.1 Feature: domain Description: ArdC Location: 79319-79901 bp Feature: domain Description: ArdC Location: 7931 9-79901 bp Feature: domain Description: LPD28 Location: 80063-80336 bp Feature: domain Description: LPD28 Location: 80063-80336 bp Feature: domain Description: YodL Location: 80438-80735 bp Feature: domain Description: YodL Location: 80438-80735 bp Feature: domain Description: LPD18 Location: 80783-81023 bp Feature: domain Description: LPD1 8 Location: 80783-81 023 bp Feature: domain Description: DUF3849 Location: 81083-81458 bp Feature: domain Description: DUF3849 Location: 81 083-81 458 bp Feature: domain Description: LPD16 Location: 81782-82022 bp Feature: domain Description: LPD1 6 Location: 81 782-82022 bp Feature: gene Location: 83995-84972 bp Feature: gene Location: 84973-86643 bp Ori: RGI25346.1 Gene: ltrA Feature: domain Description: RVT_N Location: 85018-85261 bp Feature: domain Description: RVT_N Location: 8501 8-85261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85306-85954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85306-85954 bp Feature: domain Description: GIIM Note: maturase Location: 86008-86239 bp Feature: domain Description: GIIM Note: maturase Location: 86008-86239 bp Feature: gene Location: 87221-94393 bp Ori: RGI25347.1 Feature: domain Description: AdoMet_MTases Location: 90794-91142 bp Feature: domain Description: AdoMet_MTases Location: 90794-91 1 42 bp Feature: domain Description: COG4646 Location: 91340-93896 bp Feature: domain Description: COG4646 Location: 91 340-93896 bp Feature: domain Description: KOG1000 Location: 94250-94376 bp Feature: domain Description: KOG1 000 Location: 94250-94376 bp Feature: gene Location: 94491-94754 bp Ori: RGI25348.1 Feature: domain Description: PhdYeFM_antitox Location: 94503-94656 bp Feature: domain Description: PhdYeFM_antitox Location: 94503-94656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), LPD28 (pfam18843), YodL (pfam14191), LPD18 (pfam18832), DUF3849 (pfam12960), LPD16 (pfam18830), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AdoMet_MTases (cl17173)
COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PhdYeFM_antitox (pfam02604)

Seq: QTZB01000024.1 Ruminococcus sp. OM08-13AT OM08-13AT.Scaf24, whole genome shotgun sequence (12675 bp)
Overview 1 RT 1: 3879-12525 bp Neighborhood of RT #1 [3879, 12530] IscR HDGYP SpaA CollagenBindB SpaA RVT-GII Feature: gene Location: 3879-5327 bp Ori: RGI23044.1 Feature: domain Description: IscR Location: 3882-4281 bp Feature: domain Description: IscR Location: 3882 -42 81 bp Feature: domain Description: HDGYP Location: 4497-5298 bp Feature: domain Description: HDGYP Location: 4497-52 98 bp Feature: gene Location: 5340-11435 bp Ori: RGI23045.1 Feature: domain Description: SpaA Location: 9756-9960 bp Feature: domain Description: SpaA Location: 9756-9960 bp Feature: domain Description: CollagenBindB Location: 10134-10362 bp Feature: domain Description: CollagenBindB Location: 10134-10362 bp Feature: domain Description: SpaA Location: 10551-10806 bp Feature: domain Description: SpaA Location: 10551-10806 bp Feature: gene Location: 12057-12530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12303-12525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 303-12 52 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), SpaA (pfam17802), CollagenBindB (cl15753), RVT-GII

Seq: QTZB01000010.1 Ruminococcus sp. OM08-13AT OM08-13AT.Scaf10, whole genome shotgun sequence (166522 bp)
Overview 1 RT 1: 9291-13614 bp Neighborhood of RT #1 [9291, 13614] RVT-DGRs Feature: gene Location: 9291-9695 bp Feature: gene Location: 9722-10267 bp Feature: gene Location: 10278-11724 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10494-11214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10494-11214 bp Feature: gene Location: 12055-12606 bp Feature: gene Location: 12682-13614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs