myRT

myRT report for GCA_003462505.1_ASM346250v1

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Seq: QTZD01000026.1 Ruminococcus sp. OM07-7 OM07-7.Scaf26, whole genome shotgun sequence (30257 bp)
Overview 1 RT 1: 864-7502 bp Neighborhood of RT #1 [864, 7867] Acetyltransf_7 RVT-GII TMAO_torS Zn_dep_PLPC Feature: gene Location: 864-1307 bp Ori: RGI30711.1 Feature: domain Description: Acetyltransf_7 Location: 963-1206 bp Feature: domain Description: Acetyltransf_7 Location: 963-1 206 bp Feature: gene Location: 1529-1708 bp Feature: gene Location: 1798-3093 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053-2743 bp Feature: gene Location: 3887-6676 bp Ori: RGI30713.1 Feature: domain Description: TMAO_torS Location: 5489-6641 bp Feature: domain Description: TMAO_torS Location: 5489-6641 bp Feature: gene Location: 7046-7867 bp Ori: RGI30714.1 Feature: domain Description: Zn_dep_PLPC Location: 7067-7502 bp Feature: domain Description: Zn_dep_PLPC Location: 7067-7502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_7 (pfam13508), RVT-GII, TMAO_torS (TIGR02956), Zn_dep_PLPC (smart00770)

Seq: QTZD01000009.1 Ruminococcus sp. OM07-7 OM07-7.Scaf9, whole genome shotgun sequence (153427 bp)
Overview 1 RT 1: 64657-69739 bp Neighborhood of RT #1 [64657, 69739] RVT-DGRs BppU_N Feature: gene Location: 64657-64935 bp Feature: gene Location: 65156-65500 bp Feature: gene Location: 65448-66653 bp Ori: RGI33720.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65730-66378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65730-66378 bp Feature: gene Location: 67044-69500 bp Ori: RGI33721.1 Feature: domain Description: BppU_N Location: 67113-67461 bp Feature: domain Description: BppU_N Location: 67113-67461 bp Feature: gene Location: 69500-69739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, BppU_N

Seq: QTZD01000008.1 Ruminococcus sp. OM07-7 OM07-7.Scaf8, whole genome shotgun sequence (182246 bp)
Overview 1 RT 1: 1317-6183 bp Neighborhood of RT #1 [1317, 6183] RVT-GII GIIM Feature: gene Location: 1317-1676 bp Feature: gene Location: 1995-2267 bp Feature: gene Location: 2497-3816 bp Ori: RGI34173.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2743-3358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2743 -3 3 58 bp Feature: domain Description: GIIM Note: maturase Location: 3424-3643 bp Feature: domain Description: GIIM Note: maturase Location: 3 424-3 643 bp Feature: gene Location: 4793-5668 bp Feature: gene Location: 5701-6183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QTZD01000034.1 Ruminococcus sp. OM07-7 OM07-7.Scaf34, whole genome shotgun sequence (9562 bp)
Overview 1 RT 1: 412-6293 bp Neighborhood of RT #1 [412, 7342] PDDEXK_2 RVT-UG24 YtfP Feature: gene Location: 412-1365 bp Ori: RGI29666.1 Feature: domain Description: PDDEXK_2 Location: 505-1159 bp Feature: domain Description: PDDEXK_2 Location: 505-1159 bp Feature: gene Location: 1712-5245 bp Ori: RGI29667.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2258-2735 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2258-2735 bp Feature: gene Location: 5249-5770 bp Feature: gene Location: 5915-7342 bp Ori: RGI29669.1 Feature: domain Description: YtfP Location: 6038-6293 bp Feature: domain Description: YtfP Location: 6038-6293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-UG24, YtfP (COG2105)

Seq: QTZD01000011.1 Ruminococcus sp. OM07-7 OM07-7.Scaf11, whole genome shotgun sequence (112158 bp)
Overview 1 RT 1: 17886-29023 bp Neighborhood of RT #1 [17886, 29052] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA IscR HDGYP Feature: gene Location: 17886-19346 bp Ori: RGI33152.1 Feature: domain Description: IscR Location: 17889-18291 bp Feature: domain Description: IscR Location: 17889-18291 bp Feature: domain Description: HDGYP Location: 18591-19335 bp Feature: domain Description: HDGYP Location: 185 91-19335 bp Feature: gene Location: 19477-19797 bp Feature: gene Location: 20149-20874 bp Ori: RGI33154.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20395-20620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20395 -20620 bp Feature: domain Description: HTH_30 Location: 20677-20833 bp Feature: domain Description: HTH_30 Location: 20677-20833 bp Feature: gene Location: 21496-27591 bp Ori: RGI33155.1 Feature: domain Description: SpaA Location: 25912-26116 bp Feature: domain Description: SpaA Location: 25 912-26116 bp Feature: domain Description: CollagenBindB Location: 26290-26518 bp Feature: domain Description: CollagenBindB Location: 26290-265 18 bp Feature: domain Description: SpaA Location: 26707-26962 bp Feature: domain Description: SpaA Location: 26707-26962 bp Feature: gene Location: 27604-29052 bp Ori: RGI33156.1 Feature: domain Description: IscR Location: 27607-28006 bp Feature: domain Description: IscR Location: 27607-28006 bp Feature: domain Description: HDGYP Location: 28222-29023 bp Feature: domain Description: HDGYP Location: 28222-29023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753)