myRT

myRT report for GCA_003462585.1_ASM346258v1

Download annotations/find similar RTs

Seq: QTZH01000006.1 Ruminococcus sp. OM04-4AA OM04-4AA.Scaf6, whole genome shotgun sequence (97007 bp)
Overview 1 RT 1: 38661-45214 bp 2 RT 2: 94812-96817 bp Neighborhood of RT #1 [38661, 45222] DUF3801 VirD4 RVT-GII SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TnpV Neighborhood of RT #2 [94812, 97007] TTRAP YodL LPD18 DUF4316 RVT-UNC Feature: gene Location: 38661-39188 bp Ori: RGI52160.1 Feature: domain Description: DUF3801 Location: 38748-39168 bp Feature: domain Description: DUF3801 Location: 38748-391 68 bp Feature: gene Location: 39278-39874 bp Feature: domain Description: VirD4 Location: 39464-39875 bp Feature: domain Description: VirD4 Location: 39464-39875 bp Feature: gene Location: 40562-42433 bp Ori: RGI52161.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40874-41618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40874-41 61 8 bp Feature: gene Location: 42719-44881 bp Ori: RGI52204.1 Feature: domain Description: SR_TndX_transposase Location: 43019-43448 bp Feature: domain Description: SR_TndX_transposase Location: 4301 9-43448 bp Feature: domain Description: Recombinase Location: 43544-43904 bp Feature: domain Description: Recombinase Location: 43544-43904 bp Feature: domain Description: Zn_ribbon_recom Location: 43949-44135 bp Feature: domain Description: Zn_ribbon_recom Location: 43949-441 35 bp Feature: domain Description: DUF4368 Location: 44411-44606 bp Feature: domain Description: DUF4368 Location: 4441 1 -44606 bp Feature: gene Location: 44878-45222 bp Ori: RGI52162.1 Feature: domain Description: TnpV Location: 44890-45214 bp Feature: domain Description: TnpV Location: 44890-4521 4 bp Feature: gene Location: 94812-95063 bp Ori: RGI52200.1 Feature: domain Description: TTRAP Location: 94836-95010 bp Feature: domain Description: TTRAP Location: 94836-9501 0 bp Feature: gene Location: 95060-95980 bp Ori: RGI52201.1 Feature: domain Description: YodL Location: 95075-95372 bp Feature: domain Description: YodL Location: 95075-95372 bp Feature: domain Description: LPD18 Location: 95393-95645 bp Feature: domain Description: LPD1 8 Location: 95393-95645 bp Feature: domain Description: DUF4316 Location: 95762-95891 bp Feature: domain Description: DUF431 6 Location: 95762-95891 bp Feature: gene Location: 96112-97007 bp Ori: RGI52202.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 96535-96817 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 96535-9681 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), TnpV (pfam14198), TTRAP (pfam14203), YodL (pfam14191)
LPD18 (pfam18832), DUF4316 (pfam14195), RVT-UG12/RVT-UG14/RVT-UG8/RVT-AbiP2(RVT-UNC)

Seq: QTZH01000070.1 Ruminococcus sp. OM04-4AA OM04-4AA.Scaf70, whole genome shotgun sequence (11975 bp)
Overview 1 RT 1: 6575-9600 bp Neighborhood of RT #1 [6575, 9872] RVT-Retrons DUF1643 HTH_XRE Feature: gene Location: 6575-6925 bp Feature: gene Location: 6931-7215 bp Feature: gene Location: 7468-8508 bp Ori: RGI44434.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7693-8245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7693-82 45 bp Feature: gene Location: 8731-9255 bp Ori: RGI44435.1 Feature: domain Description: DUF1643 Location: 8764-9178 bp Feature: domain Description: DUF1643 Location: 8764-9178 bp Feature: gene Location: 9408-9872 bp Ori: RGI44436.1 Feature: domain Description: HTH_XRE Location: 9429-9600 bp Feature: domain Description: HTH_XRE Location: 942 9-9600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF1643 (pfam07799), HTH_XRE (smart00530)

Seq: QTZH01000031.1 Ruminococcus sp. OM04-4AA OM04-4AA.Scaf31, whole genome shotgun sequence (39759 bp)
Overview 1 RT 1: 19799-30971 bp Neighborhood of RT #1 [19799, 31000] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA IscR HDGYP Feature: gene Location: 19799-21259 bp Ori: RGI47504.1 Feature: domain Description: IscR Location: 19802-20204 bp Feature: domain Description: IscR Location: 19802-20204 bp Feature: domain Description: HDGYP Location: 20504-21248 bp Feature: domain Description: HDGYP Location: 20504-21248 bp Feature: gene Location: 21391-21711 bp Feature: gene Location: 22062-22787 bp Ori: RGI47506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22308-22533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 08-2253 3 bp Feature: domain Description: HTH_30 Location: 22590-22746 bp Feature: domain Description: HTH_3 0 Location: 22590-22746 bp Feature: gene Location: 23408-29539 bp Ori: RGI47507.1 Feature: domain Description: SpaA Location: 27869-28064 bp Feature: domain Description: SpaA Location: 27869-28064 bp Feature: domain Description: CollagenBindB Location: 28238-28466 bp Feature: domain Description: CollagenBindB Location: 2823 8-28466 bp Feature: domain Description: SpaA Location: 28655-28910 bp Feature: domain Description: SpaA Location: 28655-28910 bp Feature: gene Location: 29552-31000 bp Ori: RGI47508.1 Feature: domain Description: IscR Location: 29555-29954 bp Feature: domain Description: IscR Location: 29555-29954 bp Feature: domain Description: HDGYP Location: 30170-30971 bp Feature: domain Description: HDGYP Location: 3 0170-3 0971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753)