myRT

myRT report for GCA_003462665.1_ASM346266v1

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Seq: QTZL01000009.1 Ruminococcus sp. OF05-2BH OF05-2BH.Scaf9, whole genome shotgun sequence (166496 bp)
Overview 1 RT 1: 9279-13602 bp Neighborhood of RT #1 [9279, 13602] RVT-DGRs Feature: gene Location: 9279-9683 bp Feature: gene Location: 9710-10255 bp Feature: gene Location: 10266-11712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10482-11202 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0482-1 1 202 bp Feature: gene Location: 12043-12594 bp Feature: gene Location: 12670-13602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTZL01000015.1 Ruminococcus sp. OF05-2BH OF05-2BH.Scaf15, whole genome shotgun sequence (106613 bp)
Overview 1 RT 1: 79097-94644 bp Neighborhood of RT #1 [79097, 94742] ArdC LPD28 YodL LPD18 DUF3849 LPD16 RVT_N RVT-GII GIIM AdoMet_MTases COG4646 KOG1000 PhdYeFM_antitox Feature: gene Location: 79097-83839 bp Ori: RGI54504.1 Feature: domain Description: ArdC Location: 79307-79889 bp Feature: domain Description: ArdC Location: 79307-79889 bp Feature: domain Description: LPD28 Location: 80051-80324 bp Feature: domain Description: LPD2 8 Location: 80051-8032 4 bp Feature: domain Description: YodL Location: 80426-80723 bp Feature: domain Description: YodL Location: 8042 6-8072 3 bp Feature: domain Description: LPD18 Location: 80771-81011 bp Feature: domain Description: LPD18 Location: 80771-81011 bp Feature: domain Description: DUF3849 Location: 81071-81446 bp Feature: domain Description: DUF3849 Location: 81071-81446 bp Feature: domain Description: LPD16 Location: 81770-82010 bp Feature: domain Description: LPD16 Location: 81770-82 010 bp Feature: gene Location: 83983-84960 bp Feature: gene Location: 84961-86631 bp Ori: RGI54505.1 Gene: ltrA Feature: domain Description: RVT_N Location: 85006-85249 bp Feature: domain Description: RVT_N Location: 85006-852 49 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85294-85942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852 94-85942 bp Feature: domain Description: GIIM Note: maturase Location: 85996-86227 bp Feature: domain Description: GIIM Note: maturase Location: 85996-862 2 7 bp Feature: gene Location: 87209-94381 bp Ori: RGI54506.1 Feature: domain Description: AdoMet_MTases Location: 90782-91130 bp Feature: domain Description: AdoMet_MTases Location: 90782 -91130 bp Feature: domain Description: COG4646 Location: 91328-93884 bp Feature: domain Description: COG4646 Location: 9132 8-93884 bp Feature: domain Description: KOG1000 Location: 94238-94364 bp Feature: domain Description: KOG1000 Location: 942 38-94364 bp Feature: gene Location: 94479-94742 bp Ori: RGI54507.1 Feature: domain Description: PhdYeFM_antitox Location: 94491-94644 bp Feature: domain Description: PhdYeFM_antitox Location: 94491-94644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), LPD28 (pfam18843), YodL (pfam14191), LPD18 (pfam18832), DUF3849 (pfam12960), LPD16 (pfam18830), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AdoMet_MTases (cl17173)
COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PhdYeFM_antitox (pfam02604)

Seq: QTZL01000001.1 Ruminococcus sp. OF05-2BH OF05-2BH.Scaf1, whole genome shotgun sequence (324396 bp)
Overview 1 RT 1: 227807-231359 bp Neighborhood of RT #1 [227807, 231359] Phage_holin_1 EnvC RVT-DGRs Avd_like Feature: gene Location: 227807-228121 bp Ori: RGI56978.1 Feature: domain Description: Phage_holin_1 Location: 227873-228116 bp Feature: domain Description: Phage_holin_1 Location: 227873 -228116 bp Feature: gene Location: 228111-228494 bp Ori: RGI56979.1 Feature: domain Description: EnvC Location: 228126-228411 bp Feature: domain Description: EnvC Location: 228126-228411 bp Feature: gene Location: 228491-229585 bp Ori: RGI56980.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 228704-229358 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 228704-2293 58 bp Feature: gene Location: 229892-230242 bp Ori: RGI56981.1 Gene: avd Feature: domain Description: Avd_like Location: 229922-230231 bp Feature: domain Description: Avd_like Location: 229922-23 023 1 bp Feature: gene Location: 230295-231359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_1 (pfam04531), EnvC (COG4942), RVT-DGRs, Avd_like (cd16376)

Seq: QTZL01000027.1 Ruminococcus sp. OF05-2BH OF05-2BH.Scaf27, whole genome shotgun sequence (12200 bp)
Overview 1 RT 1: 3530-12179 bp Neighborhood of RT #1 [3530, 12200] IscR HDGYP SpaA CollagenBindB SpaA RVT-GII Feature: gene Location: 3530-4978 bp Ori: RGI52010.1 Feature: domain Description: IscR Location: 3533-3932 bp Feature: domain Description: IscR Location: 3533-3932 bp Feature: domain Description: HDGYP Location: 4148-4949 bp Feature: domain Description: HDGYP Location: 4 14 8-4 94 9 bp Feature: gene Location: 4991-11086 bp Ori: RGI52011.1 Feature: domain Description: SpaA Location: 9407-9611 bp Feature: domain Description: SpaA Location: 94 07-9611 bp Feature: domain Description: CollagenBindB Location: 9785-10013 bp Feature: domain Description: CollagenBindB Location: 9785-10013 bp Feature: domain Description: SpaA Location: 10202-10457 bp Feature: domain Description: SpaA Location: 10202-104 57 bp Feature: gene Location: 11708-12200 bp Ori: RGI52013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11954-12179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11954 -12179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), SpaA (pfam17802), CollagenBindB (cl15753), RVT-GII