myRT

myRT report for GCA_003462725.1_ASM346272v1

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Seq: QRXY01000020.1 Coprococcus comes strain AF16-31 AF16-31.Scaf20, whole genome shotgun sequence (56870 bp)
Overview 1 RT 1: 133-3681 bp Neighborhood of RT #1 [133, 3737] RVT-GII GIIM Virulence_RhuM Feature: gene Location: 133-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1 054 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1348 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 26-1 348 bp Feature: gene Location: 1774-2682 bp Feature: gene Location: 2712-3737 bp Feature: domain Description: Virulence_RhuM Location: 2916-3681 bp Feature: domain Description: Virulence_RhuM Location: 291 6-3681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Virulence_RhuM (pfam13310)

Seq: QRXY01000051.1 Coprococcus comes strain AF16-31 AF16-31.Scaf51, whole genome shotgun sequence (1875 bp)
Overview 1 RT 1: 196-1703 bp Neighborhood of RT #1 [196, 1771] RVT-GII GIIM Feature: gene Location: 196-390 bp Feature: gene Location: 482-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1406 bp Feature: domain Description: GIIM Note: maturase Location: 1487-1703 bp Feature: domain Description: GIIM Note: maturase Location: 1487-1703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRXY01000030.1 Coprococcus comes strain AF16-31 AF16-31.Scaf30, whole genome shotgun sequence (25420 bp)
Overview 1 RT 1: 16493-20854 bp Neighborhood of RT #1 [16493, 20854] DEDD_Tnp_IS110 Transposase_20 RVT-Retrons Feature: gene Location: 16493-17143 bp Feature: gene Location: 17369-18601 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 17381-17873 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 173 81-17873 bp Feature: domain Description: Transposase_20 Location: 18221-18473 bp Feature: domain Description: Transposase_20 Location: 18221-18473 bp Feature: gene Location: 19017-19952 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19170-19716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19170-19716 bp Feature: gene Location: 20053-20247 bp Feature: gene Location: 20240-20854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-Retrons

Seq: QRXY01000008.1 Coprococcus comes strain AF16-31 AF16-31.Scaf8, whole genome shotgun sequence (135718 bp)
Overview 1 RT 1: 123267-127116 bp Neighborhood of RT #1 [123267, 127136] Alanine_zipper RVT-DGRs Phage_XkdX Feature: gene Location: 123267-123698 bp Feature: domain Description: Alanine_zipper Location: 123486-123597 bp Feature: domain Description: Alanine_zipper Location: 1234 86-123597 bp Feature: gene Location: 123702-124997 bp Feature: gene Location: 125362-126747 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 125575-126319 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 125575-126319 bp Feature: gene Location: 126761-126982 bp Feature: gene Location: 126984-127136 bp Feature: domain Description: Phage_XkdX Location: 127005-127116 bp Feature: domain Description: Phage_XkdX Location: 127005-127116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alanine_zipper (pfam11839), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QRXY01000015.1 Coprococcus comes strain AF16-31 AF16-31.Scaf15, whole genome shotgun sequence (102551 bp)
Overview 1 RT 1: 26-2629 bp Neighborhood of RT #1 [26, 2811] RVT-GII GIIM DppA YdiL Feature: gene Location: 26-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194-815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194-815 bp Feature: domain Description: GIIM Note: maturase Location: 887-1109 bp Feature: domain Description: GIIM Note: maturase Location: 887-1109 bp Feature: gene Location: 1364-1702 bp Feature: domain Description: DppA Location: 1532-1685 bp Feature: domain Description: DppA Location: 15 32-1685 bp Feature: gene Location: 1975-2811 bp Feature: domain Description: YdiL Location: 1984-2629 bp Feature: domain Description: YdiL Location: 1984-2629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppA (COG2362), YdiL (COG1266), RVT-GII, GIIM (pfam08388)

Seq: QRXY01000050.1 Coprococcus comes strain AF16-31 AF16-31.Scaf50, whole genome shotgun sequence (1919 bp)
Overview 1 RT 1: 453-1668 bp Neighborhood of RT #1 [453, 1847] RVT-GII GIIM Feature: gene Location: 453-1847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1395 bp Feature: domain Description: GIIM Note: maturase Location: 1452-1668 bp Feature: domain Description: GIIM Note: maturase Location: 1452-16 6 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)