myRT

myRT report for GCA_003462815.1_ASM346281v1

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Seq: QRYE01000001.1 Paraprevotella clara strain AF15-8 AF15-8.Scaf1, whole genome shotgun sequence (366923 bp)
Overview 1 RT 1: 278525-282458 bp Neighborhood of RT #1 [278525, 282458] RVT-UG27 Feature: gene Location: 278525-279004 bp Feature: gene Location: 279054-279551 bp Feature: gene Location: 279874-281136 bp Ori: RGU65789.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 280066-280702 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 280066-280702 bp Feature: gene Location: 281129-281797 bp Feature: gene Location: 281811-282458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRYE01000058.1 Paraprevotella clara strain AF15-8 AF15-8.Scaf58, whole genome shotgun sequence (15037 bp)
Overview 1 RT 1: 1-5370 bp Neighborhood of RT #1 [1, 6065] TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Feature: gene Location: 1-275 bp Feature: gene Location: 357-1562 bp Ori: RGU57308.1 Feature: domain Description: TraG-D_C Location: 939-1269 bp Feature: domain Description: TraG-D_C Location: 939-12 69 bp Feature: gene Location: 1567-3219 bp Ori: RGU57309.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1621-1864 bp Feature: domain Description: RVT_N Location: 162 1-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1909-2557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1909-2 557 bp Feature: domain Description: GIIM Note: maturase Location: 2611-2842 bp Feature: domain Description: GIIM Note: maturase Location: 2 611-2 842 bp Feature: gene Location: 3859-4782 bp Feature: domain Description: YWFCY Location: 3868-4045 bp Feature: domain Description: YWFCY Location: 3868-4045 bp Feature: gene Location: 4815-6065 bp Ori: RGU57310.1 Feature: domain Description: Relaxase Location: 4869-5370 bp Feature: domain Description: Relaxase Location: 4869-5370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: QRYE01000013.1 Paraprevotella clara strain AF15-8 AF15-8.Scaf13, whole genome shotgun sequence (112201 bp)
Overview 1 RT 1: 4161-7230 bp Neighborhood of RT #1 [4161, 7244] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 4161-4493 bp Ori: RGU62511.1 Feature: domain Description: DUF4133 Location: 4179-4449 bp Feature: domain Description: DUF413 3 Location: 4179-4449 bp Feature: gene Location: 4504-4746 bp Ori: RGU62512.1 Feature: domain Description: DUF4134 Location: 4651-4741 bp Feature: domain Description: DUF413 4 Location: 4651-4741 bp Feature: gene Location: 4743-6398 bp Ori: RGU62513.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4800-5037 bp Feature: domain Description: RVT_N Location: 4800-503 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5088-5736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5088-573 6 bp Feature: domain Description: GIIM Note: maturase Location: 5793-6024 bp Feature: domain Description: GIIM Note: maturase Location: 5793 -6024 bp Feature: gene Location: 6694-6993 bp Feature: gene Location: 7014-7244 bp Ori: RGU62515.1 Feature: domain Description: DUF4134 Location: 7050-7230 bp Feature: domain Description: DUF413 4 Location: 7050-723 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRYE01000037.1 Paraprevotella clara strain AF15-8 AF15-8.Scaf37, whole genome shotgun sequence (35072 bp)
Overview 1 RT 1: 8066-14643 bp Neighborhood of RT #1 [8066, 14654] DUF2971 COG3943 RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like UxaC UxaC Feature: gene Location: 8066-9079 bp Ori: RGU59624.1 Feature: domain Description: DUF2971 Location: 8615-8870 bp Feature: domain Description: DUF2971 Location: 8615-8870 bp Feature: gene Location: 9187-9549 bp Ori: RGU59625.1 Feature: domain Description: COG3943 Location: 9226-9478 bp Feature: domain Description: COG394 3 Location: 9226-94 78 bp Feature: gene Location: 9764-11571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10028-10781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10028-10781 bp Feature: gene Location: 12118-13287 bp Ori: RGU59645.1 Feature: domain Description: Arm-DNA-bind_5 Location: 12148-12403 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1214 8-124 03 bp Feature: domain Description: Phage_int_SAM_5 Location: 12442-12763 bp Feature: domain Description: Phage_int_SAM_5 Location: 124 4 2-12763 bp Feature: domain Description: INTN1_C_like Location: 12802-13270 bp Feature: domain Description: INTN1_C_like Location: 12802-13270 bp Feature: gene Location: 13704-14654 bp Feature: domain Description: UxaC Location: 13707-13953 bp Feature: domain Description: UxaC Location: 13707-13953 bp Feature: domain Description: UxaC Location: 14265-14643 bp Feature: domain Description: UxaC Location: 14 265-14 64 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), COG3943 (Uncharacterized conserved protein ), RVT-GII, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), UxaC (pfam02614)

Seq: QRYE01000095.1 Paraprevotella clara strain AF15-8 AF15-8.Scaf95, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 643-1918 bp Neighborhood of RT #1 [643, 2295] RVT_N RVT-GII GIIM Feature: gene Location: 643-2295 bp Ori: RGU55082.1 Gene: ltrA Feature: domain Description: RVT_N Location: 697-940 bp Feature: domain Description: RVT_N Location: 697-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985 -1633 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)