myRT

myRT report for GCA_003463005.1_ASM346300v1

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Seq: QSCI01000001.1 Prevotella copri strain OF03-3 OF03-3.Scaf1, whole genome shotgun sequence (171095 bp)
Overview 1 RT 1: 81009-86309 bp Neighborhood of RT #1 [81009, 86332] RVT-DGRs XerC Feature: gene Location: 81009-82482 bp Feature: gene Location: 82700-82918 bp Feature: gene Location: 83037-84608 bp Ori: RGX98625.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83247-83988 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83247-83988 bp Feature: gene Location: 84611-85003 bp Feature: gene Location: 85148-86332 bp Ori: RGX98627.1 Feature: domain Description: XerC Location: 85553-86309 bp Feature: domain Description: XerC Location: 85553-86309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, XerC (COG4973)

Seq: QSCI01000146.1 Prevotella copri strain OF03-3 OF03-3.Scaf146, whole genome shotgun sequence (5377 bp)
Overview 1 RT 1: 1-4517 bp Neighborhood of RT #1 [1, 4540] RVT-GII GIIM COG5421 Feature: gene Location: 1-929 bp Feature: gene Location: 1827-2162 bp Feature: gene Location: 2294-3699 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2636-3254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 636-32 54 bp Feature: domain Description: GIIM Note: maturase Location: 3308-3443 bp Feature: domain Description: GIIM Note: maturase Location: 3308-3443 bp Feature: gene Location: 3774-3956 bp Feature: gene Location: 4241-4540 bp Feature: domain Description: COG5421 Location: 4244-4517 bp Feature: domain Description: COG542 1 Location: 42 44-4517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG5421 (Transposase )

Seq: QSCI01000110.1 Prevotella copri strain OF03-3 OF03-3.Scaf110, whole genome shotgun sequence (10079 bp)
Overview 1 RT 1: 2149-5455 bp Neighborhood of RT #1 [2149, 5514] DUF5106 Thioredoxin_8 RVT-DGRs Fib_succ_major Avd_like Feature: gene Location: 2149-2358 bp Feature: gene Location: 2525-3379 bp Ori: RGX89824.1 Feature: domain Description: DUF5106 Location: 2621-2957 bp Feature: domain Description: DUF5106 Location: 2621-2957 bp Feature: domain Description: Thioredoxin_8 Location: 3041-3317 bp Feature: domain Description: Thioredoxin_8 Location: 3 041-3 3 17 bp Feature: gene Location: 3394-4668 bp Ori: RGX89825.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3619-4339 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 619-43 3 9 bp Feature: gene Location: 4622-4891 bp Ori: RGX89826.1 Feature: domain Description: Fib_succ_major Location: 4643-4832 bp Feature: domain Description: Fib_succ_major Location: 4643 -483 2 bp Feature: gene Location: 5119-5514 bp Ori: RGX89827.1 Feature: domain Description: Avd_like Location: 5146-5455 bp Feature: domain Description: Avd_like Location: 5146-5455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), RVT-DGRs, Fib_succ_major (TIGR02145), Avd_like (cd16376)

Seq: QSCI01000210.1 Prevotella copri strain OF03-3 OF03-3.Scaf210, whole genome shotgun sequence (1928 bp)
Overview 1 RT 1: 429-1653 bp Neighborhood of RT #1 [429, 1835] RVT-GII GIIM Feature: gene Location: 429-1835 bp Ori: RGX85261.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1389 bp Feature: domain Description: GIIM Note: maturase Location: 1446-1653 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 6-1653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSCI01000097.1 Prevotella copri strain OF03-3 OF03-3.Scaf97, whole genome shotgun sequence (11758 bp)
Overview 1 RT 1: 2797-11677 bp Neighborhood of RT #1 [2797, 11677] KAP_NTPase RVT-Retrons Feature: gene Location: 2797-3030 bp Feature: gene Location: 3271-7116 bp Ori: RGX90606.1 Feature: domain Description: KAP_NTPase Location: 3607-4390 bp Feature: domain Description: KAP_NTPase Location: 3607-4390 bp Feature: gene Location: 7333-8373 bp Ori: RGX90607.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7555-8128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75 5 5 -8128 bp Feature: gene Location: 8515-9762 bp Feature: gene Location: 9833-11677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT-Retrons

Seq: QSCI01000047.1 Prevotella copri strain OF03-3 OF03-3.Scaf47, whole genome shotgun sequence (25938 bp)
Overview 1 RT 1: 9835-15768 bp Neighborhood of RT #1 [9835, 15809] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 9835-10464 bp Ori: RGX93233.1 Feature: domain Description: DUF4141 Location: 9850-10003 bp Feature: domain Description: DUF4141 Location: 9850-10003 bp Feature: gene Location: 10494-11078 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 10497-11064 bp Feature: domain Description: Bac_Flav_CT_G Location: 10497-1106 4 bp Feature: gene Location: 11189-13000 bp Ori: RGX93234.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11453-12275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11453-12275 bp Feature: domain Description: Intron_maturas2 Location: 12344-12701 bp Feature: domain Description: Intron_maturas2 Location: 12344-12701 bp Feature: domain Description: HNHc Note: nucleases Location: 12824-12971 bp Feature: domain Description: HNHc Note: nucleases Location: 12824-12971 bp Feature: gene Location: 13550-15486 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 13553-15101 bp Feature: domain Description: Bac_Flav_CT_G Location: 13553-15101 bp Feature: gene Location: 15483-15809 bp Ori: RGX93235.1 Feature: domain Description: DUF4133 Location: 15501-15768 bp Feature: domain Description: DUF4133 Location: 15501-1576 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: QSCI01000194.1 Prevotella copri strain OF03-3 OF03-3.Scaf194, whole genome shotgun sequence (2517 bp)
Overview 1 RT 1: 687-2517 bp Neighborhood of RT #1 [687, 2517] RVT_N RVT-GII YkfC Feature: gene Location: 687-2339 bp Ori: RGX86116.1 Gene: ltrA Feature: domain Description: RVT_N Location: 759-1002 bp Feature: domain Description: RVT_N Location: 7 59-1002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047 -1695 bp Feature: domain Description: YkfC Location: 1905-1995 bp Feature: domain Description: YkfC Location: 1905-1995 bp Feature: gene Location: 2357-2517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QSCI01000228.1 Prevotella copri strain OF03-3 OF03-3.Scaf228, whole genome shotgun sequence (1536 bp)
Overview 1 RT 1: 1-319 bp Neighborhood of RT #1 [1, 1115] RVT-GII Feature: gene Location: 1-1115 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII