myRT

myRT report for GCA_003463035.1_ASM346303v1

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Seq: QSCK01000096.1 Roseburia sp. OF03-24 OF03-24.Scaf96, whole genome shotgun sequence (681 bp)
Overview 1 RT 1: 85-499 bp Neighborhood of RT #1 [85, 681] RVT-GII GIIM Feature: gene Location: 85-681 bp Ori: RGX88273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-223 bp Feature: domain Description: GIIM Note: maturase Location: 283-499 bp Feature: domain Description: GIIM Note: maturase Location: 283-499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSCK01000038.1 Roseburia sp. OF03-24 OF03-24.Scaf38, whole genome shotgun sequence (34244 bp)
Overview 1 RT 1: 115-4073 bp Neighborhood of RT #1 [115, 4102] DUF3837 RVT-CRISPR cas1_HMARI Cas2_I_II_III Feature: gene Location: 115-450 bp Ori: RGX90664.1 Feature: domain Description: DUF3837 Location: 118-415 bp Feature: domain Description: DUF3837 Location: 118-415 bp Feature: gene Location: 1577-2374 bp Ori: RGX90665.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1787-2360 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1787-2 360 bp Feature: gene Location: 2290-3483 bp Ori: RGX90666.1 Gene: cas1 Feature: domain Description: cas1_HMARI Location: 2503-3475 bp Feature: domain Description: cas1_HMARI Location: 2 503-3475 bp Feature: gene Location: 3842-4102 bp Ori: RGX90667.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 3851-4073 bp Feature: domain Description: Cas2 _I_II_III Location: 3851-4073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3837 (pfam12939), RVT-CRISPR, cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442)

Seq: QSCK01000088.1 Roseburia sp. OF03-24 OF03-24.Scaf88, whole genome shotgun sequence (779 bp)
Overview 1 RT 1: 6-552 bp Neighborhood of RT #1 [6, 779] RVT-GII Feature: gene Location: 6-779 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252-552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252-552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII