myRT

myRT report for GCA_003463115.1_ASM346311v1

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Seq: QSCQ01000054.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf54, whole genome shotgun sequence (21792 bp)
Overview 1 RT 1: 10986-15482 bp Neighborhood of RT #1 [10986, 15520] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Feature: gene Location: 10986-11990 bp Feature: domain Description: Bac_Flav_CT_J Location: 10992-11961 bp Feature: domain Description: Bac_Flav_CT_J Location: 1 0992-1 1 961 bp Feature: gene Location: 11994-12530 bp Feature: gene Location: 12523-14358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12817-13639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 281 7-1 3639 bp Feature: domain Description: Intron_maturas2 Location: 13798-14167 bp Feature: domain Description: Intron_maturas2 Location: 1 3798-1 41 67 bp Feature: domain Description: HNHc Note: nucleases Location: 14191-14332 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 91 -1 4332 bp Feature: gene Location: 14879-15106 bp Feature: domain Description: DUF4141 Location: 14891-15047 bp Feature: domain Description: DUF41 41 Location: 1 4891 -1 5047 bp Feature: gene Location: 15137-15520 bp Feature: domain Description: DUF3876 Location: 15218-15482 bp Feature: domain Description: DUF3876 Location: 1 521 8-1 5482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992)

Seq: QSCQ01000012.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf12, whole genome shotgun sequence (139885 bp)
Overview 1 RT 1: 112820-126639 bp Neighborhood of RT #1 [112820, 126755] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 112820-115009 bp Feature: domain Description: GlnA3 Location: 112892-115007 bp Feature: domain Description: GlnA3 Location: 112 892 -115007 bp Feature: gene Location: 115404-117566 bp Feature: gene Location: 117769-118899 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118090-118642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118090-118642 bp Feature: gene Location: 118896-124862 bp Feature: domain Description: DUF4011 Location: 120126-120639 bp Feature: domain Description: DUF4011 Location: 12 012 6-12 0639 bp Feature: domain Description: DEXXQc_SF1 Location: 120978-121593 bp Feature: domain Description: DEXXQc_SF1 Location: 12 0978-12 1593 bp Feature: domain Description: DEXXQc_SF1 Location: 122223-123165 bp Feature: domain Description: DEXXQc_SF1 Location: 12 2 2 2 3-12 3165 bp Feature: domain Description: TIGR00376 Location: 123297-123687 bp Feature: domain Description: TIGR00376 Location: 12 32 97-12 3687 bp Feature: domain Description: MTES_1575 Location: 123837-124122 bp Feature: domain Description: MTES_1575 Location: 12 3837-12 412 2 bp Feature: domain Description: DUF3320 Location: 124371-124512 bp Feature: domain Description: DUF332 0 Location: 12 4371-12 4512 bp Feature: gene Location: 124959-126755 bp Feature: domain Description: rpsA Location: 125025-126639 bp Feature: domain Description: rpsA Location: 12 502 5-12 6639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSCQ01000028.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf28, whole genome shotgun sequence (79818 bp)
Overview 1 RT 1: 54932-57990 bp Neighborhood of RT #1 [54932, 58004] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 54932-55252 bp Feature: domain Description: DUF4133 Location: 54950-55220 bp Feature: domain Description: DUF413 3 Location: 54950-55220 bp Feature: gene Location: 55276-55518 bp Feature: domain Description: DUF4134 Location: 55423-55513 bp Feature: domain Description: DUF413 4 Location: 55423 -55513 bp Feature: gene Location: 55515-57170 bp Feature: RT Description: RVT_N Location: 55572-55809 bp Feature: RT Description: RVT_N Location: 55572-55809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55860-56508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55860-56508 bp Feature: domain Description: GIIM Note: maturase Location: 56565-56796 bp Feature: domain Description: GIIM Note: maturase Location: 56565-56796 bp Feature: gene Location: 57466-57765 bp Feature: gene Location: 57786-58004 bp Feature: domain Description: DUF4134 Location: 57807-57990 bp Feature: domain Description: DUF413 4 Location: 57807-57990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSCQ01000047.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf47, whole genome shotgun sequence (27593 bp)
Overview 1 RT 1: 20475-27050 bp Neighborhood of RT #1 [20475, 27050] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 20475-21770 bp Feature: domain Description: Relaxase Location: 20652-20943 bp Feature: domain Description: Relaxase Location: 20652-2094 3 bp Feature: domain Description: Relaxase Location: 21252-21501 bp Feature: domain Description: Relaxase Location: 21252-21501 bp Feature: gene Location: 22117-23040 bp Feature: domain Description: YWFCY Location: 22123-22300 bp Feature: domain Description: YWFCY Location: 22123-22300 bp Feature: gene Location: 23677-25329 bp Feature: RT Description: RVT_N Location: 23731-23974 bp Feature: RT Description: RVT_N Location: 23731-23974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24019-24667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 019-24 667 bp Feature: domain Description: GIIM Note: maturase Location: 24721-24952 bp Feature: domain Description: GIIM Note: maturase Location: 24 721-24 952 bp Feature: gene Location: 25334-26539 bp Feature: domain Description: TraG-D_C Location: 25916-26249 bp Feature: domain Description: TraG-D_C Location: 25916-2624 9 bp Feature: gene Location: 26655-27050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSCQ01000022.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf22, whole genome shotgun sequence (92494 bp)
Overview 1 RT 1: 54233-59523 bp Neighborhood of RT #1 [54233, 59570] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 54233-54349 bp Feature: domain Description: Bac_Flav_CT_G Location: 54236-54335 bp Feature: domain Description: Bac_Flav_CT_G Location: 5 4236-5 4335 bp Feature: gene Location: 54348-54449 bp Feature: gene Location: 54453-56276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54717-55539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 4717-5 5 5 39 bp Feature: domain Description: Intron_maturas2 Location: 55713-55956 bp Feature: domain Description: Intron_maturas2 Location: 5 5 713-5 5 95 6 bp Feature: domain Description: HNHc Note: nucleases Location: 56067-56238 bp Feature: domain Description: HNHc Note: nucleases Location: 5 6067-5 6238 bp Feature: gene Location: 56845-59241 bp Feature: domain Description: Bac_Flav_CT_G Location: 56848-59230 bp Feature: domain Description: Bac_Flav_CT_G Location: 5 6848-5 9230 bp Feature: gene Location: 59238-59570 bp Feature: domain Description: DUF4133 Location: 59256-59523 bp Feature: domain Description: DUF4133 Location: 5 925 6-5 95 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: QSCQ01000010.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf10, whole genome shotgun sequence (149465 bp)
Overview 1 RT 1: 109472-113406 bp Neighborhood of RT #1 [109472, 113406] RVT-DGRs Feature: gene Location: 109472-109750 bp Feature: gene Location: 109760-111121 bp Feature: gene Location: 111451-112638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111784-112411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111784-112411 bp Feature: gene Location: 112601-113029 bp Feature: gene Location: 113026-113406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSCQ01000011.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf11, whole genome shotgun sequence (147504 bp)
Overview 1 RT 1: 94238-103842 bp Neighborhood of RT #1 [94238, 103842] RVT-DGRs Feature: gene Location: 94238-94546 bp Feature: gene Location: 94802-95290 bp Feature: gene Location: 95292-96593 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95505-96099 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95505-96099 bp Feature: gene Location: 97077-103628 bp Feature: gene Location: 103663-103842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSCQ01000035.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf35, whole genome shotgun sequence (54024 bp)
Overview 1 RT 1: 209-3557 bp Neighborhood of RT #1 [209, 3577] RVT_N RVT-GII GIIM DUF4491 PRK11179 Feature: gene Location: 209-1699 bp Feature: RT Description: RVT_N Location: 278-518 bp Feature: RT Description: RVT_N Location: 278 -518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1211 bp Feature: domain Description: GIIM Note: maturase Location: 1265-1499 bp Feature: domain Description: GIIM Note: maturase Location: 1265-1499 bp Feature: gene Location: 2797-3108 bp Feature: domain Description: DUF4491 Location: 2824-3094 bp Feature: domain Description: DUF4491 Location: 28 24-3094 bp Feature: gene Location: 3113-3577 bp Feature: domain Description: PRK11179 Location: 3122-3557 bp Feature: domain Description: PRK11179 Location: 3122-3557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4491 (pfam14898), PRK11179 (DNA-binding transcriptional regulator AsnC; Provisional)

Seq: QSCQ01000033.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf33, whole genome shotgun sequence (69246 bp)
Overview 1 RT 1: 10040-15564 bp Neighborhood of RT #1 [10040, 15575] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 10040-10375 bp Feature: domain Description: DUF4133 Location: 10067-10334 bp Feature: domain Description: DUF4133 Location: 10067-10334 bp Feature: gene Location: 10372-11292 bp Feature: domain Description: Bac_Flav_CT_G Location: 10375-11293 bp Feature: domain Description: Bac_Flav_CT_G Location: 10375-1129 3 bp Feature: gene Location: 11894-13555 bp Feature: RT Description: RVT_N Location: 11948-12191 bp Feature: RT Description: RVT_N Location: 119 48-1219 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12236-12884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12236-12884 bp Feature: domain Description: GIIM Note: maturase Location: 12938-13169 bp Feature: domain Description: GIIM Note: maturase Location: 129 38-13169 bp Feature: gene Location: 13540-15246 bp Feature: domain Description: Bac_Flav_CT_G Location: 13672-15238 bp Feature: domain Description: Bac_Flav_CT_G Location: 13672-15238 bp Feature: gene Location: 15261-15575 bp Feature: domain Description: DUF3876 Location: 15315-15564 bp Feature: domain Description: DUF3876 Location: 15315-15564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSCQ01000023.1 Bacteroides caccae strain OF02-8 OF02-8.Scaf23, whole genome shotgun sequence (89164 bp)
Overview 1 RT 1: 75095-78295 bp Neighborhood of RT #1 [75095, 78295] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 75095-75439 bp Feature: domain Description: Gp49 Location: 75149-75407 bp Feature: domain Description: Gp49 Location: 75149-75407 bp Feature: gene Location: 75444-75755 bp Feature: domain Description: HTH_XRE Location: 75558-75711 bp Feature: domain Description: HTH_XRE Location: 75558-75711 bp Feature: gene Location: 76002-77492 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76395-76992 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76395-76992 bp Feature: gene Location: 77560-78066 bp Feature: gene Location: 78050-78295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs