myRT

myRT report for GCA_003463165.1_ASM346316v1

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Seq: QSCS01000023.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf23, whole genome shotgun sequence (89164 bp)
Overview 1 RT 1: 75095-78295 bp Neighborhood of RT #1 [75095, 78295] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 75095-75439 bp Feature: domain Description: Gp49 Location: 75149-75407 bp Feature: domain Description: Gp49 Location: 751 49-75407 bp Feature: gene Location: 75444-75755 bp Feature: domain Description: HTH_XRE Location: 75558-75711 bp Feature: domain Description: HTH_XRE Location: 75558-7571 1 bp Feature: gene Location: 76002-77492 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76395-76992 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 76395-76992 bp Feature: gene Location: 77560-78066 bp Feature: gene Location: 78050-78295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: QSCS01000056.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf56, whole genome shotgun sequence (21792 bp)
Overview 1 RT 1: 10986-15482 bp Neighborhood of RT #1 [10986, 15520] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Feature: gene Location: 10986-11990 bp Feature: domain Description: Bac_Flav_CT_J Location: 10992-11961 bp Feature: domain Description: Bac_Flav_CT_J Location: 10992 -11961 bp Feature: gene Location: 11994-12530 bp Feature: gene Location: 12523-14358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12817-13639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 817-13639 bp Feature: domain Description: Intron_maturas2 Location: 13798-14167 bp Feature: domain Description: Intron_maturas2 Location: 13798-14167 bp Feature: domain Description: HNHc Note: nucleases Location: 14191-14332 bp Feature: domain Description: HNHc Note: nucleases Location: 14191-14332 bp Feature: gene Location: 14879-15106 bp Feature: domain Description: DUF4141 Location: 14891-15047 bp Feature: domain Description: DUF4141 Location: 14891-15047 bp Feature: gene Location: 15137-15520 bp Feature: domain Description: DUF3876 Location: 15218-15482 bp Feature: domain Description: DUF3876 Location: 152 18-15482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992)

Seq: QSCS01000012.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf12, whole genome shotgun sequence (141084 bp)
Overview 1 RT 1: 112819-126638 bp Neighborhood of RT #1 [112819, 126754] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 112819-115008 bp Feature: domain Description: GlnA3 Location: 112891-115006 bp Feature: domain Description: GlnA3 Location: 112891-115006 bp Feature: gene Location: 115403-117565 bp Feature: gene Location: 117768-118898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118089-118641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118089-118641 bp Feature: gene Location: 118895-124861 bp Feature: domain Description: DUF4011 Location: 120125-120638 bp Feature: domain Description: DUF4011 Location: 120125-12063 8 bp Feature: domain Description: DEXXQc_SF1 Location: 120977-121592 bp Feature: domain Description: DEXXQc_SF1 Location: 120977-121592 bp Feature: domain Description: DEXXQc_SF1 Location: 122222-123164 bp Feature: domain Description: DEXXQc_SF1 Location: 122222-123 164 bp Feature: domain Description: TIGR00376 Location: 123296-123686 bp Feature: domain Description: TIGR003 76 Location: 123 296-123 686 bp Feature: domain Description: MTES_1575 Location: 123836-124121 bp Feature: domain Description: MTES_1575 Location: 123 83 6-124121 bp Feature: domain Description: DUF3320 Location: 124370-124511 bp Feature: domain Description: DUF3 3 20 Location: 1243 70-124511 bp Feature: gene Location: 124958-126754 bp Feature: domain Description: rpsA Location: 125024-126638 bp Feature: domain Description: rpsA Location: 125024-12663 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSCS01000036.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf36, whole genome shotgun sequence (54024 bp)
Overview 1 RT 1: 209-3557 bp Neighborhood of RT #1 [209, 3577] RVT_N RVT-GII GIIM DUF4491 PRK11179 Feature: gene Location: 209-1699 bp Feature: RT Description: RVT_N Location: 278-518 bp Feature: RT Description: RVT_N Location: 278-518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 566-1211 bp Feature: domain Description: GIIM Note: maturase Location: 1265-1499 bp Feature: domain Description: GIIM Note: maturase Location: 1265-14 99 bp Feature: gene Location: 2797-3108 bp Feature: domain Description: DUF4491 Location: 2824-3094 bp Feature: domain Description: DUF4 4 91 Location: 2824 -3094 bp Feature: gene Location: 3113-3577 bp Feature: domain Description: PRK11179 Location: 3122-3557 bp Feature: domain Description: PRK11179 Location: 3122-3557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4491 (pfam14898), PRK11179 (DNA-binding transcriptional regulator AsnC; Provisional)

Seq: QSCS01000021.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf21, whole genome shotgun sequence (92510 bp)
Overview 1 RT 1: 54249-59539 bp Neighborhood of RT #1 [54249, 59586] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 54249-54365 bp Feature: domain Description: Bac_Flav_CT_G Location: 54252-54351 bp Feature: domain Description: Bac_Flav_CT_G Location: 5 425 2-5 435 1 bp Feature: gene Location: 54364-54465 bp Feature: gene Location: 54469-56292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54733-55555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 4733-5 5 5 5 5 bp Feature: domain Description: Intron_maturas2 Location: 55729-55972 bp Feature: domain Description: Intron_maturas2 Location: 5 5 729-5 5 972 bp Feature: domain Description: HNHc Note: nucleases Location: 56083-56254 bp Feature: domain Description: HNHc Note: nucleases Location: 5 6083-5 625 4 bp Feature: gene Location: 56861-59257 bp Feature: domain Description: Bac_Flav_CT_G Location: 56864-59246 bp Feature: domain Description: Bac_Flav_CT_G Location: 5 6864-5 9246 bp Feature: gene Location: 59254-59586 bp Feature: domain Description: DUF4133 Location: 59272-59539 bp Feature: domain Description: DUF4133 Location: 5 9272-5 95 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: QSCS01000049.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf49, whole genome shotgun sequence (25492 bp)
Overview 1 RT 1: 18374-24949 bp Neighborhood of RT #1 [18374, 24949] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 18374-19669 bp Feature: domain Description: Relaxase Location: 18551-18842 bp Feature: domain Description: Relaxase Location: 18551-18842 bp Feature: domain Description: Relaxase Location: 19151-19400 bp Feature: domain Description: Relaxase Location: 19151-19400 bp Feature: gene Location: 20016-20939 bp Feature: domain Description: YWFCY Location: 20022-20199 bp Feature: domain Description: YWFCY Location: 20022-20199 bp Feature: gene Location: 21576-23228 bp Feature: RT Description: RVT_N Location: 21630-21873 bp Feature: RT Description: RVT_N Location: 216 30-21873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21918-22566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21918-2256 6 bp Feature: domain Description: GIIM Note: maturase Location: 22620-22851 bp Feature: domain Description: GIIM Note: maturase Location: 226 20-22851 bp Feature: gene Location: 23233-24438 bp Feature: domain Description: TraG-D_C Location: 23815-24148 bp Feature: domain Description: TraG-D_C Location: 23815-24148 bp Feature: gene Location: 24554-24949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSCS01000033.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf33, whole genome shotgun sequence (69246 bp)
Overview 1 RT 1: 10040-15564 bp Neighborhood of RT #1 [10040, 15575] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 10040-10375 bp Feature: domain Description: DUF4133 Location: 10067-10334 bp Feature: domain Description: DUF4133 Location: 10067 -10334 bp Feature: gene Location: 10372-11292 bp Feature: domain Description: Bac_Flav_CT_G Location: 10375-11293 bp Feature: domain Description: Bac_Flav_CT_G Location: 1037 5-11293 bp Feature: gene Location: 11894-13555 bp Feature: RT Description: RVT_N Location: 11948-12191 bp Feature: RT Description: RVT_N Location: 11948-12191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12236-12884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12236-12884 bp Feature: domain Description: GIIM Note: maturase Location: 12938-13169 bp Feature: domain Description: GIIM Note: maturase Location: 12938-13169 bp Feature: gene Location: 13540-15246 bp Feature: domain Description: Bac_Flav_CT_G Location: 13672-15238 bp Feature: domain Description: Bac_Flav_CT_G Location: 1367 2-15238 bp Feature: gene Location: 15261-15575 bp Feature: domain Description: DUF3876 Location: 15315-15564 bp Feature: domain Description: DUF387 6 Location: 15315-15564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSCS01000028.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf28, whole genome shotgun sequence (79818 bp)
Overview 1 RT 1: 54932-57990 bp Neighborhood of RT #1 [54932, 58004] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 54932-55252 bp Feature: domain Description: DUF4133 Location: 54950-55220 bp Feature: domain Description: DUF4133 Location: 54950-55220 bp Feature: gene Location: 55276-55518 bp Feature: domain Description: DUF4134 Location: 55423-55513 bp Feature: domain Description: DUF4134 Location: 55423-55513 bp Feature: gene Location: 55515-57170 bp Feature: RT Description: RVT_N Location: 55572-55809 bp Feature: RT Description: RVT_N Location: 55572-558 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55860-56508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 558 60-56508 bp Feature: domain Description: GIIM Note: maturase Location: 56565-56796 bp Feature: domain Description: GIIM Note: maturase Location: 56565-56796 bp Feature: gene Location: 57466-57765 bp Feature: gene Location: 57786-58004 bp Feature: domain Description: DUF4134 Location: 57807-57990 bp Feature: domain Description: DUF4134 Location: 578 07-57990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSCS01000010.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf10, whole genome shotgun sequence (148611 bp)
Overview 1 RT 1: 35313-39247 bp Neighborhood of RT #1 [35313, 39247] RVT-DGRs Feature: gene Location: 35313-35693 bp Feature: gene Location: 35690-36118 bp Feature: gene Location: 36081-37268 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36414-37041 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36414-37041 bp Feature: gene Location: 37598-38959 bp Feature: gene Location: 38969-39247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSCS01000011.1 Bacteroides caccae strain OF02-6LB OF02-6LB.Scaf11, whole genome shotgun sequence (147504 bp)
Overview 1 RT 1: 94238-103842 bp Neighborhood of RT #1 [94238, 103842] RVT-DGRs Feature: gene Location: 94238-94546 bp Feature: gene Location: 94802-95290 bp Feature: gene Location: 95292-96593 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95505-96099 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95505-96099 bp Feature: gene Location: 97077-103628 bp Feature: gene Location: 103663-103842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs