myRT

myRT report for GCA_003463185.1_ASM346318v1

Download annotations/find similar RTs

Seq: QSCT01000005.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf5, whole genome shotgun sequence (202538 bp)
Overview 1 RT 1: 89346-93749 bp Neighborhood of RT #1 [89346, 93817] Aes RVT-GII Acetyltransf_1 Feature: gene Location: 89346-90323 bp Feature: domain Description: Aes Location: 89442-90087 bp Feature: domain Description: Aes Location: 89442-90087 bp Feature: gene Location: 90340-90996 bp Feature: gene Location: 91559-92854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91814-92504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 81 4-92504 bp Feature: gene Location: 92944-93123 bp Feature: gene Location: 93386-93817 bp Feature: domain Description: Acetyltransf_1 Location: 93527-93749 bp Feature: domain Description: Acetyltransf_1 Location: 93527-93749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), RVT-GII, Acetyltransf_1 (pfam00583)

Seq: QSCT01000033.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf33, whole genome shotgun sequence (7963 bp)
Overview 1 RT 1: 30-2806 bp Neighborhood of RT #1 [30, 2820] RVT-GII RVT-GII T4SS-DNA_transf TnpW Feature: gene Location: 30-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-372 bp Feature: gene Location: 815-1534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1124-1511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 4-1511 bp Feature: gene Location: 2276-2620 bp Feature: domain Description: T4SS-DNA_transf Location: 2288-2564 bp Feature: domain Description: T4SS-DNA_transf Location: 2 2 88-2 564 bp Feature: gene Location: 2662-2820 bp Feature: domain Description: TnpW Location: 2707-2806 bp Feature: domain Description: TnpW Location: 2 707-2 806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, TnpW (pfam14202)

Seq: QSCT01000008.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf8, whole genome shotgun sequence (120971 bp)
Overview 1 RT 1: 96524-101733 bp Neighborhood of RT #1 [96524, 101738] PRK07726 RVT-Retrons YjiL truA Feature: gene Location: 96524-98704 bp Feature: domain Description: PRK07726 Location: 96530-98501 bp Feature: domain Description: PRK07726 Location: 9653 0-98501 bp Feature: gene Location: 98727-98984 bp Feature: gene Location: 98981-99982 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99146-99701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99146-99701 bp Feature: gene Location: 100217-100975 bp Feature: domain Description: YjiL Location: 100223-100970 bp Feature: domain Description: YjiL Location: 100223 -100970 bp Feature: gene Location: 101001-101738 bp Feature: domain Description: truA Location: 101004-101733 bp Feature: domain Description: truA Location: 101004-10173 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjiL (COG1924), truA (PRK00021), PRK07726 (DNA topoisomerase 3), RVT-Retrons

Seq: QSCT01000002.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf2, whole genome shotgun sequence (308694 bp)
Overview 1 RT 1: 231063-252501 bp Neighborhood of RT #1 [231063, 252686] UgpB GH43_LbAraf43-like CBM35_Lmo2446-like CBM35_Lmo2446-like CBM35_Lmo2446-like CBM35_Lmo2446-like RicinB_lectin_2 RicinB_lectin_2 CBM35_Lmo2446-like CBM35_Lmo2446-like I-set I-set RVT-GII GIIM LacZ Big_4 Big_4 F5_F8_type_C F5_F8_type_C F5_F8_type_C Flg_new Flg_new FIVAR FIVAR FIVAR FIVAR LacZ Big_4 Big_4 F5_F8_type_C F5_F8_type_C F5_F8_type_C FIVAR FIVAR FIVAR FIVAR Feature: gene Location: 231063-232373 bp Feature: domain Description: UgpB Location: 231075-232362 bp Feature: domain Description: UgpB Location: 231075-232362 bp Feature: gene Location: 232635-237995 bp Feature: domain Description: GH43_LbAraf43-like Location: 232830-233712 bp Feature: domain Description: GH4 3_LbAraf4 3-like Location: 232830-233712 bp Feature: domain Description: CBM35_Lmo2446-like Location: 233859-234207 bp Feature: domain Description: CBM35_Lmo24 4 6-like Location: 233859-234 207 bp Feature: domain Description: CBM35_Lmo2446-like Location: 234243-234600 bp Feature: domain Description: CBM35_Lmo24 4 6-like Location: 234 24 3-234 600 bp Feature: domain Description: CBM35_Lmo2446-like Location: 234621-234849 bp Feature: domain Description: CBM35_Lmo24 4 6-like Location: 234 621-234 84 9 bp Feature: domain Description: CBM35_Lmo2446-like Location: 234882-235245 bp Feature: domain Description: CBM35_Lmo24 4 6-like Location: 234 882-23524 5 bp Feature: domain Description: RicinB_lectin_2 Location: 235302-235476 bp Feature: domain Description: RicinB_lectin_2 Location: 235302-2354 76 bp Feature: domain Description: RicinB_lectin_2 Location: 235527-235689 bp Feature: domain Description: RicinB_lectin_2 Location: 235527-235689 bp Feature: domain Description: CBM35_Lmo2446-like Location: 235896-236292 bp Feature: domain Description: CBM35_Lmo24 4 6-like Location: 235896-236292 bp Feature: domain Description: CBM35_Lmo2446-like Location: 236364-236751 bp Feature: domain Description: CBM35_Lmo24 4 6-like Location: 236364 -236751 bp Feature: domain Description: I-set Location: 237297-237510 bp Feature: domain Description: I-set Location: 237297-237510 bp Feature: domain Description: I-set Location: 237582-237789 bp Feature: domain Description: I-set Location: 237582-237789 bp Feature: gene Location: 238181-239485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238382-239000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238382-239000 bp Feature: domain Description: GIIM Note: maturase Location: 239054-239270 bp Feature: domain Description: GIIM Note: maturase Location: 239054 -239270 bp Feature: gene Location: 240060-246452 bp Feature: domain Description: LacZ Location: 240192-242790 bp Feature: domain Description: LacZ Location: 24 0192-24 2790 bp Feature: domain Description: Big_4 Location: 242805-242955 bp Feature: domain Description: Big_4 Location: 24 2805-24 2955 bp Feature: domain Description: Big_4 Location: 243012-243180 bp Feature: domain Description: Big_4 Location: 24 3012-24 3180 bp Feature: domain Description: F5_F8_type_C Location: 243339-243687 bp Feature: domain Description: F5_F8_type_C Location: 24 3339-24 3687 bp Feature: domain Description: F5_F8_type_C Location: 244032-244422 bp Feature: domain Description: F5_F8_type_C Location: 24 4 032-24 4 4 22 bp Feature: domain Description: F5_F8_type_C Location: 244545-244956 bp Feature: domain Description: F5_F8_type_C Location: 24 4 54 5-24 4 956 bp Feature: domain Description: Flg_new Location: 245010-245205 bp Feature: domain Description: Flg_new Location: 24 5010-24 5205 bp Feature: domain Description: Flg_new Location: 245229-245424 bp Feature: domain Description: Flg_new Location: 24 5229-24 54 24 bp Feature: domain Description: FIVAR Location: 245466-245631 bp Feature: domain Description: FIVAR Location: 24 54 66-24 5631 bp Feature: domain Description: FIVAR Location: 245685-245865 bp Feature: domain Description: FIVAR Location: 24 5685-24 5865 bp Feature: domain Description: FIVAR Location: 245895-246078 bp Feature: domain Description: FIVAR Location: 24 5895-24 6078 bp Feature: domain Description: FIVAR Location: 246096-246279 bp Feature: domain Description: FIVAR Location: 24 6096-24 6279 bp Feature: gene Location: 246726-252686 bp Feature: domain Description: LacZ Location: 246930-249135 bp Feature: domain Description: LacZ Location: 24 6930-24 9135 bp Feature: domain Description: Big_4 Location: 249510-249648 bp Feature: domain Description: Big_4 Location: 24 9510-24 964 8 bp Feature: domain Description: Big_4 Location: 249705-249867 bp Feature: domain Description: Big_4 Location: 24 9705-24 9867 bp Feature: domain Description: F5_F8_type_C Location: 249993-250362 bp Feature: domain Description: F5_F8_type_C Location: 24 9993-250362 bp Feature: domain Description: F5_F8_type_C Location: 250752-251094 bp Feature: domain Description: F5_F8_type_C Location: 250752-251094 bp Feature: domain Description: F5_F8_type_C Location: 251238-251601 bp Feature: domain Description: F5_F8_type_C Location: 251238-251601 bp Feature: domain Description: FIVAR Location: 251685-251871 bp Feature: domain Description: FIVAR Location: 251685-251871 bp Feature: domain Description: FIVAR Location: 251886-252072 bp Feature: domain Description: FIVAR Location: 251886-252072 bp Feature: domain Description: FIVAR Location: 252090-252273 bp Feature: domain Description: FIVAR Location: 252090-252273 bp Feature: domain Description: FIVAR Location: 252366-252501 bp Feature: domain Description: FIVAR Location: 252366-252501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpB (COG1653), GH43_LbAraf43-like (cd18820), CBM35_Lmo2446-like (cd04083), RicinB_lectin_2 (pfam14200), I-set (pfam07679), RVT-GII, GIIM (pfam08388), LacZ (COG3250), Big_4 (pfam07532), F5_F8_type_C (pfam00754)
Flg_new (pfam09479), FIVAR (pfam07554)

Seq: QSCT01000017.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf17, whole genome shotgun sequence (68035 bp)
Overview 1 RT 1: 40-1220 bp Neighborhood of RT #1 [40, 1220] RVT-DGRs XhlA Feature: gene Location: 40-540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43-316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43-316 bp Feature: gene Location: 596-859 bp Feature: domain Description: XhlA Location: 620-824 bp Feature: domain Description: XhlA Location: 620-824 bp Feature: gene Location: 897-1220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, XhlA (pfam10779)

Seq: QSCT01000001.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf1, whole genome shotgun sequence (350906 bp)
Overview 1 RT 1: 29176-32383 bp Neighborhood of RT #1 [29176, 32409] FlgJ Phage_holin_4_1 RVT-DGRs PHA00653 Avd_like Feature: gene Location: 29176-30120 bp Feature: domain Description: FlgJ Location: 29194-29665 bp Feature: domain Description: FlgJ Location: 29194-296 6 5 bp Feature: gene Location: 30124-30552 bp Feature: domain Description: Phage_holin_4_1 Location: 30178-30505 bp Feature: domain Description: Phage_holin_4_1 Location: 30178-30505 bp Feature: gene Location: 30624-31664 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30834-31449 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30834-31449 bp Feature: gene Location: 31809-32036 bp Feature: domain Description: PHA00653 Location: 31893-32034 bp Feature: domain Description: PHA006 53 Location: 31893-32034 bp Feature: gene Location: 32020-32409 bp Feature: domain Description: Avd_like Location: 32080-32383 bp Feature: domain Description: Avd_like Location: 32080-32383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlgJ (COG1705), Phage_holin_4_1 (pfam05105), RVT-DGRs, PHA00653 (mtd;major tropism determinant), Avd_like (cd16376)

Seq: QSCT01000006.1 Tyzzerella nexilis strain OF02-4LB OF02-4LB.Scaf6, whole genome shotgun sequence (162592 bp)
Overview 1 RT 1: 31-2601 bp 2 RT 2: 158525-161720 bp Neighborhood of RT #1 [31, 2601] RVT-DGRs Avd_like Neighborhood of RT #2 [158525, 162110] MobA_MobL Ssb RVT-GII Feature: gene Location: 31-696 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 277-634 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27 7 -634 bp Feature: gene Location: 1051-1470 bp Feature: domain Description: Avd_like Location: 1132-1438 bp Feature: domain Description: Avd_like Location: 1132-1438 bp Feature: gene Location: 1540-2601 bp Feature: gene Location: 158525-160016 bp Feature: domain Description: MobA_MobL Location: 158528-159206 bp Feature: domain Description: MobA_MobL Location: 158528-159206 bp Feature: gene Location: 159956-160360 bp Feature: domain Description: Ssb Location: 159959-160277 bp Feature: domain Description: Ssb Location: 159959-16027 7 bp Feature: gene Location: 160775-162110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161030-161720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161030-1617 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, MobA_MobL (pfam03389), Ssb (COG0629), RVT-GII