myRT

myRT report for GCA_003463205.1_ASM346320v1

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Seq: QSCU01000029.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf29, whole genome shotgun sequence (81682 bp)
Overview 1 RT 1: 36968-49851 bp Neighborhood of RT #1 [36968, 49967] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 36968-37447 bp Feature: gene Location: 38611-40773 bp Feature: gene Location: 40979-42109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41300-41843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 300-41 843 bp Feature: gene Location: 42111-48068 bp Feature: domain Description: DUF4011 Location: 43341-43854 bp Feature: domain Description: DUF401 1 Location: 43341 -43854 bp Feature: domain Description: DEXXQc_SF1 Location: 44193-45057 bp Feature: domain Description: DEXXQc_SF1 Location: 441 93-45057 bp Feature: domain Description: DEXXQc_SF1 Location: 45621-46380 bp Feature: domain Description: DEXXQc_SF1 Location: 45621 -46380 bp Feature: domain Description: TIGR00376 Location: 46509-46899 bp Feature: domain Description: TIGR00376 Location: 46509-46899 bp Feature: domain Description: MTES_1575 Location: 47052-47337 bp Feature: domain Description: MTES_1 575 Location: 47052-47337 bp Feature: domain Description: DUF3320 Location: 47577-47718 bp Feature: domain Description: DUF3320 Location: 47577-4771 8 bp Feature: gene Location: 48165-49967 bp Feature: domain Description: rpsA Location: 48234-49851 bp Feature: domain Description: rpsA Location: 48234-49851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSCU01000057.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf57, whole genome shotgun sequence (4676 bp)
Overview 1 RT 1: 1-4675 bp Neighborhood of RT #1 [1, 4676] RVT-DGRs Feature: gene Location: 1-641 bp Feature: gene Location: 652-3619 bp Feature: gene Location: 4192-4676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4408-4675 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4408-4675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSCU01000001.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf1, whole genome shotgun sequence (746224 bp)
Overview 1 RT 1: 265945-269450 bp Neighborhood of RT #1 [265945, 269476] PepSY_like RVT-DGRs Avd_like DUF1566 Feature: gene Location: 265945-266325 bp Feature: domain Description: PepSY_like Location: 266131-266326 bp Feature: domain Description: PepSY_like Location: 26613 1-2663 26 bp Feature: gene Location: 266461-266736 bp Feature: gene Location: 266702-268123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 267074-267779 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 267074-267779 bp Feature: gene Location: 268138-268518 bp Feature: domain Description: Avd_like Location: 268165-268471 bp Feature: domain Description: Avd_like Location: 268165-268471 bp Feature: gene Location: 268664-269476 bp Feature: domain Description: DUF1566 Location: 269198-269450 bp Feature: domain Description: DUF1566 Location: 269198-269450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PepSY_like (pfam11396), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QSCU01000062.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf62, whole genome shotgun sequence (3098 bp)
Overview 1 RT 1: 116-3097 bp Neighborhood of RT #1 [116, 3098] integrase_gron RVT-GII GIIM integrase_gron Zn_Tnp_IS91 Feature: gene Location: 116-706 bp Feature: domain Description: integrase_gron Location: 179-692 bp Feature: domain Description: integrase_gron Location: 179-692 bp Feature: gene Location: 1120-2526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1462-2080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 62-2080 bp Feature: domain Description: GIIM Note: maturase Location: 2137-2365 bp Feature: domain Description: GIIM Note: maturase Location: 2137-2365 bp Feature: gene Location: 2670-2954 bp Feature: domain Description: integrase_gron Location: 2673-2910 bp Feature: domain Description: integrase_gron Location: 2673-2910 bp Feature: gene Location: 2938-3098 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2971-3097 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2971-3097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), integrase_gron (TIGR02249), Zn_Tnp_IS91 (pfam14319)

Seq: QSCU01000003.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf3, whole genome shotgun sequence (328910 bp)
Overview 1 RT 1: 179413-185365 bp 2 RT 2: 191146-194921 bp Neighborhood of RT #1 [179413, 185365] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [191146, 194986] zf-CHC2 RVT-GII Intron_maturas2 Toprim_2 DUF3872 Feature: gene Location: 179413-179736 bp Feature: domain Description: DUF4133 Location: 179428-179698 bp Feature: domain Description: DUF4133 Location: 179428-179698 bp Feature: gene Location: 179733-181893 bp Feature: domain Description: Bac_Flav_CT_G Location: 179736-181818 bp Feature: domain Description: Bac_Flav_CT_G Location: 179736-181818 bp Feature: gene Location: 182377-184191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182641-183463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182641-183463 bp Feature: domain Description: Intron_maturas2 Location: 183538-183856 bp Feature: domain Description: Intron_maturas2 Location: 1835 38-18385 6 bp Feature: domain Description: HNHc Note: nucleases Location: 184012-184162 bp Feature: domain Description: HNHc Note: nucleases Location: 184012-184162 bp Feature: gene Location: 184299-184745 bp Feature: domain Description: Bac_Flav_CT_G Location: 184302-184710 bp Feature: domain Description: Bac_Flav_CT_G Location: 184302-184710 bp Feature: gene Location: 184742-185365 bp Feature: gene Location: 191146-191313 bp Feature: domain Description: zf-CHC2 Location: 191176-191308 bp Feature: domain Description: zf-CHC2 Location: 191176-191308 bp Feature: gene Location: 191419-191838 bp Feature: gene Location: 191873-193681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192137-192959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192137-19295 9 bp Feature: domain Description: Intron_maturas2 Location: 193037-193340 bp Feature: domain Description: Intron_maturas2 Location: 193037-193340 bp Feature: gene Location: 193695-194486 bp Feature: domain Description: Toprim_2 Location: 194205-194463 bp Feature: domain Description: Toprim_2 Location: 194205 -194463 bp Feature: gene Location: 194483-194986 bp Feature: domain Description: DUF3872 Location: 194534-194921 bp Feature: domain Description: DUF3872 Location: 1945 34-194921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), zf-CHC2 (pfam01807), Toprim_2 (pfam13155), DUF3872 (pfam12988)

Seq: QSCU01000107.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf107, whole genome shotgun sequence (540 bp)
Overview 1 RT 1: 1-316 bp Neighborhood of RT #1 [1, 540] RVT-DGRs Feature: gene Location: 1-540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43-316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43-316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSCU01000014.1 Bacteroides sp. OF02-3LB OF02-3LB.Scaf14, whole genome shotgun sequence (165843 bp)
Overview 1 RT 1: 91378-96968 bp Neighborhood of RT #1 [91378, 96988] INTN1_C_like RVT_N RVT-GII GIIM GIIM PDDEXK_2 OafA Feature: gene Location: 91378-91746 bp Feature: domain Description: INTN1_C_like Location: 91549-91678 bp Feature: domain Description: INTN1_C_like Location: 91549-9167 8 bp Feature: gene Location: 91851-92204 bp Feature: gene Location: 93131-94828 bp Feature: RT Description: RVT_N Location: 93197-93431 bp Feature: RT Description: RVT_N Location: 93197 -93431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93485-94133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93485-94133 bp Feature: domain Description: GIIM Note: maturase Location: 94184-94418 bp Feature: domain Description: GIIM Note: maturase Location: 94184-94418 bp Feature: domain Description: GIIM Note: maturase Location: 94496-94670 bp Feature: domain Description: GIIM Note: maturase Location: 94496-9467 0 bp Feature: gene Location: 94839-95714 bp Feature: domain Description: PDDEXK_2 Location: 94923-95577 bp Feature: domain Description: PDDEXK_2 Location: 94923-9557 7 bp Feature: gene Location: 95834-96988 bp Feature: domain Description: OafA Location: 95867-96968 bp Feature: domain Description: OafA Location: 95867 -96968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PDDEXK_2 (pfam12784), OafA (COG1835)