myRT

myRT report for GCA_003463375.1_ASM346337v1

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Seq: QSCL01000040.1 Bacteroides uniformis strain OF03-17 OF03-17.Scaf40, whole genome shotgun sequence (46126 bp)
Overview 1 RT 1: 37590-43524 bp Neighborhood of RT #1 [37590, 43994] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 37590-38993 bp Feature: gene Location: 39275-40186 bp Ori: RGX94921.1 Feature: domain Description: Toprim_2 Location: 39809-40097 bp Feature: domain Description: Toprim_2 Location: 39809-40097 bp Feature: gene Location: 40176-41984 bp Ori: RGX94922.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40440-41262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40440-41 262 bp Feature: domain Description: Intron_maturas2 Location: 41331-41640 bp Feature: domain Description: Intron_maturas2 Location: 41 331 -41 640 bp Feature: gene Location: 42548-42715 bp Feature: gene Location: 42927-43994 bp Ori: RGX94923.1 Feature: domain Description: AAA_25 Location: 43068-43524 bp Feature: domain Description: AAA_25 Location: 43068-43524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: QSCL01000091.1 Bacteroides uniformis strain OF03-17 OF03-17.Scaf91, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 574-2356 bp Neighborhood of RT #1 [574, 2385] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 574-2385 bp Ori: RGX91559.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: domain Description: Intron_maturas2 Location: 1735-2050 bp Feature: domain Description: Intron_maturas2 Location: 1735-2 050 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2356 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 06-2 356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSCL01000027.1 Bacteroides uniformis strain OF03-17 OF03-17.Scaf27, whole genome shotgun sequence (74668 bp)
Overview 1 RT 1: 446-3069 bp Neighborhood of RT #1 [446, 3104] HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 446-736 bp Ori: RGX96246.1 Feature: domain Description: HTH_28 Location: 470-614 bp Feature: domain Description: HTH_28 Location: 470-614 bp Feature: gene Location: 857-1054 bp Ori: RGX96247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-1052 bp Feature: gene Location: 1032-1409 bp Ori: RGX96248.1 Feature: domain Description: RVT_N Location: 1035-1260 bp Feature: domain Description: RVT_N Location: 103 5-1260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1314-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 14-13 83 bp Feature: gene Location: 1423-1659 bp Feature: gene Location: 2355-3104 bp Ori: RGX96250.1 Feature: domain Description: GDPD_like_2 Location: 2412-3069 bp Feature: domain Description: GDPD_like_2 Location: 2412-3 069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)

Seq: QSCL01000085.1 Bacteroides uniformis strain OF03-17 OF03-17.Scaf85, whole genome shotgun sequence (3443 bp)
Overview 1 RT 1: 166-2807 bp Neighborhood of RT #1 [166, 3007] RrnaAD RVT-GII GIIM Feature: gene Location: 166-966 bp Ori: RGX91751.1 Gene: erm(F) Feature: domain Description: RrnaAD Location: 193-931 bp Feature: domain Description: RrnaAD Location: 193-931 bp Feature: gene Location: 985-1182 bp Feature: gene Location: 1712-3007 bp Ori: RGX91753.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907-2522 bp Feature: domain Description: GIIM Note: maturase Location: 2594-2807 bp Feature: domain Description: GIIM Note: maturase Location: 2594 -2807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RrnaAD (pfam00398), RVT-GII, GIIM (pfam08388)

Seq: QSCL01000021.1 Bacteroides uniformis strain OF03-17 OF03-17.Scaf21, whole genome shotgun sequence (89172 bp)
Overview 1 RT 1: 5997-9792 bp Neighborhood of RT #1 [5997, 9792] RVT-DGRs Feature: gene Location: 5997-7316 bp Feature: gene Location: 7570-7770 bp Feature: gene Location: 7832-8647 bp Ori: RGX96968.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8165-8489 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8165 -8489 bp Feature: gene Location: 9028-9375 bp Feature: gene Location: 9397-9792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSCL01000001.1 Bacteroides uniformis strain OF03-17 OF03-17.Scaf1, whole genome shotgun sequence (266379 bp)
Overview 1 RT 1: 37931-41862 bp Neighborhood of RT #1 [37931, 41862] RVT-UG27 Feature: gene Location: 37931-38410 bp Feature: gene Location: 38460-38957 bp Feature: gene Location: 39280-40541 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 39472-39784 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 39472-39784 bp Feature: gene Location: 40534-41201 bp Feature: gene Location: 41215-41862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27