myRT

myRT report for GCA_003463485.1_ASM346348v1

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Seq: QSDB01000004.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf4, whole genome shotgun sequence (125035 bp)
Overview 1 RT 1: 65540-68204 bp Neighborhood of RT #1 [65540, 68221] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 65540-65683 bp Ori: RGY63139.1 Feature: domain Description: Phage_XkdX Location: 65561-65678 bp Feature: domain Description: Phage_XkdX Location: 65561 -65678 bp Feature: gene Location: 65680-66165 bp Feature: gene Location: 66376-67572 bp Ori: RGY63141.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66571-67288 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66571 -67288 bp Feature: gene Location: 67590-67913 bp Feature: gene Location: 67925-68221 bp Ori: RGY63143.1 Feature: domain Description: Phage_holin_5_2 Location: 67973-68204 bp Feature: domain Description: Phage_holin_5_2 Location: 67973-68204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079)

Seq: QSDB01000112.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf112, whole genome shotgun sequence (11209 bp)
Overview 1 RT 1: 1-5484 bp Neighborhood of RT #1 [1, 5486] RVT-GII GIIM M14_ASTE_ASPA-like Ggt Feature: gene Location: 1-202 bp Feature: gene Location: 355-1650 bp Ori: RGY49215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-12 97 bp Feature: domain Description: GIIM Note: maturase Location: 1375-1582 bp Feature: domain Description: GIIM Note: maturase Location: 1375-1582 bp Feature: gene Location: 2407-3159 bp Ori: RGY49208.1 Feature: domain Description: M14_ASTE_ASPA-like Location: 2548-3154 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 2 548-3154 bp Feature: gene Location: 3669-5486 bp Ori: RGY49209.1 Gene: ggt Feature: domain Description: Ggt Location: 3894-5484 bp Feature: domain Description: Ggt Location: 3894-5484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), M14_ASTE_ASPA-like (cd06910), Ggt (COG0405)

Seq: QSDB01000163.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf163, whole genome shotgun sequence (1929 bp)
Overview 1 RT 1: 82-917 bp Neighborhood of RT #1 [82, 1857] RVT-GII Feature: gene Location: 82-168 bp Feature: gene Location: 155-337 bp Feature: gene Location: 437-1857 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSDB01000001.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf1, whole genome shotgun sequence (206838 bp)
Overview 1 RT 1: 167500-172475 bp Neighborhood of RT #1 [167500, 172475] Spr RVT-GII Intron_maturas2 Feature: gene Location: 167500-168450 bp Ori: RGY63870.1 Feature: domain Description: Spr Location: 168034-168418 bp Feature: domain Description: Spr Location: 168034 -1684 18 bp Feature: gene Location: 168617-168875 bp Feature: gene Location: 169076-170872 bp Ori: RGY63871.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169343-170156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16934 3-170156 bp Feature: domain Description: Intron_maturas2 Location: 170234-170654 bp Feature: domain Description: Intron_maturas2 Location: 170234 -170654 bp Feature: gene Location: 171170-171448 bp Feature: gene Location: 171540-172475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSDB01000161.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf161, whole genome shotgun sequence (1955 bp)
Overview 1 RT 1: 118-1228 bp Neighborhood of RT #1 [118, 1401] RVT-GII GIIM Feature: gene Location: 118-1401 bp Ori: RGY47179.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-937 bp Feature: domain Description: GIIM Note: maturase Location: 997-1228 bp Feature: domain Description: GIIM Note: maturase Location: 997-1228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSDB01000136.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf136, whole genome shotgun sequence (5423 bp)
Overview 1 RT 1: 94-5207 bp Neighborhood of RT #1 [94, 5209] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 94-1278 bp Ori: RGY48224.1 Feature: domain Description: MviM Location: 115-412 bp Feature: domain Description: MviM Location: 115-412 bp Feature: domain Description: MviM Location: 487-1270 bp Feature: domain Description: MviM Location: 487-1270 bp Feature: gene Location: 1600-2544 bp Ori: RGY48225.1 Feature: domain Description: LysR Location: 1639-2497 bp Feature: domain Description: LysR Location: 16 39-2497 bp Feature: gene Location: 2603-3589 bp Ori: RGY48226.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2768-3323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 276 8-3323 bp Feature: gene Location: 3887-5209 bp Ori: RGY48227.1 Feature: domain Description: YuiF Location: 3908-5207 bp Feature: domain Description: YuiF Location: 3908-5207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056)

Seq: QSDB01000096.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf96, whole genome shotgun sequence (15687 bp)
Overview 1 RT 1: 300-5531 bp Neighborhood of RT #1 [300, 5644] Spr RVT-GII Intron_maturas2 HNHc DUF4315 DUF4366 Feature: gene Location: 300-2045 bp Ori: RGY50302.1 Feature: domain Description: Spr Location: 1719-1986 bp Feature: domain Description: Spr Location: 17 19-1986 bp Feature: gene Location: 2186-2431 bp Feature: gene Location: 2637-4424 bp Ori: RGY50304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2904-3714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2904-37 14 bp Feature: domain Description: Intron_maturas2 Location: 3789-4209 bp Feature: domain Description: Intron_maturas2 Location: 37 89-4209 bp Feature: domain Description: HNHc Note: nucleases Location: 4251-4404 bp Feature: domain Description: HNHc Note: nucleases Location: 4251-4404 bp Feature: gene Location: 4634-4894 bp Ori: RGY50305.1 Feature: domain Description: DUF4315 Location: 4649-4877 bp Feature: domain Description: DUF4315 Location: 4649-487 7 bp Feature: gene Location: 4898-5644 bp Ori: RGY50306.1 Feature: domain Description: DUF4366 Location: 5069-5531 bp Feature: domain Description: DUF4366 Location: 5069-5531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193), DUF4366 (pfam14283)

Seq: QSDB01000158.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf158, whole genome shotgun sequence (2476 bp)
Overview 1 RT 1: 123-2362 bp Neighborhood of RT #1 [123, 2362] RVT-GII Intron_maturas2 Feature: gene Location: 123-1913 bp Ori: RGY47278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1203 bp Feature: domain Description: Intron_maturas2 Location: 1287-1584 bp Feature: domain Description: Intron_maturas2 Location: 128 7-158 4 bp Feature: gene Location: 2153-2362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSDB01000156.1 [Clostridium] symbiosum strain OF01-1AC OF01-1AC.Scaf156, whole genome shotgun sequence (2693 bp)
Overview 1 RT 1: 165-1848 bp Neighborhood of RT #1 [165, 1934] RVT-UNC HNHc Feature: gene Location: 165-1934 bp Ori: RGY47282.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 414-1122 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 414-1122 bp Feature: domain Description: HNHc Note: nucleases Location: 1743-1848 bp Feature: domain Description: HNHc Note: nucleases Location: 1743-1848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-GII(RVT-UNC), HNHc (smart00507)