myRT

myRT report for GCA_003463555.1_ASM346355v1

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Seq: QSDH01000078.1 Bacteroides fragilis strain CF01-8 CF01-8.Scaf78, whole genome shotgun sequence (8006 bp)
Overview 1 RT 1: 3998-7876 bp Neighborhood of RT #1 [3998, 7929] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 3998-4408 bp Ori: RGY67407.1 Feature: domain Description: Cas_Cmr5 Location: 4046-4292 bp Feature: domain Description: Cas_Cmr5 Location: 4046-4292 bp Feature: gene Location: 4411-5355 bp Ori: RGY67410.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 4567-5344 bp Feature: domain Description: Cmr6_III-B Location: 4567-5344 bp Feature: gene Location: 5375-7645 bp Ori: RGY67408.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5582-6188 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5582-61 88 bp Feature: domain Description: Cas1_I-II-III Location: 6647-7604 bp Feature: domain Description: Cas1 _I-II-III Location: 6647-7604 bp Feature: gene Location: 7639-7929 bp Ori: RGY67409.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 7666-7876 bp Feature: domain Description: Cas2_I_II_III Location: 7666-7876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: QSDH01000038.1 Bacteroides fragilis strain CF01-8 CF01-8.Scaf38, whole genome shotgun sequence (45620 bp)
Overview 1 RT 1: 16890-20293 bp Neighborhood of RT #1 [16890, 20361] HTH_17 RVT-Retrons COG3943 Feature: gene Location: 16890-17255 bp Ori: RGY71597.1 Feature: domain Description: HTH_17 Location: 17025-17163 bp Feature: domain Description: HTH_17 Location: 1702 5-17163 bp Feature: gene Location: 17715-17936 bp Feature: gene Location: 17961-18818 bp Ori: RGY71599.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18123-18648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1812 3-18648 bp Feature: gene Location: 18849-19730 bp Feature: gene Location: 19996-20361 bp Ori: RGY71601.1 Feature: domain Description: COG3943 Location: 20035-20293 bp Feature: domain Description: COG3943 Location: 2 0035-2 02 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: QSDH01000009.1 Bacteroides fragilis strain CF01-8 CF01-8.Scaf9, whole genome shotgun sequence (140710 bp)
Overview 1 RT 1: 70244-79200 bp Neighborhood of RT #1 [70244, 79208] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 70244-72432 bp Feature: domain Description: GlnA3 Location: 70319-71048 bp Feature: domain Description: GlnA3 Location: 703 19-71048 bp Feature: gene Location: 72672-74891 bp Feature: gene Location: 75098-76210 bp Ori: RGY75411.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75413-75962 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75413 -75962 bp Feature: gene Location: 76348-78144 bp Ori: RGY75412.1 Feature: domain Description: rpsA Location: 76429-78037 bp Feature: domain Description: rpsA Location: 76429-7803 7 bp Feature: gene Location: 78294-79208 bp Ori: RGY75413.1 Feature: domain Description: RNase_Z Location: 78309-79200 bp Feature: domain Description: RNase_Z Location: 783 09-79200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)