myRT

myRT report for GCA_003463605.1_ASM346360v1

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Seq: QSDJ01000046.1 Bacteroides vulgatus strain CF01-10 CF01-10.Scaf46, whole genome shotgun sequence (37663 bp)
Overview 1 RT 1: 2953-8772 bp 2 RT 2: 10977-13544 bp Neighborhood of RT #1 [2953, 8825] Bac_Flav_CT_G Bac_Flav_CT_G RVT_N RVT-GII GIIM MPP_MS158 Neighborhood of RT #2 [10977, 13544] DUF4134 RVT-GII Intron_maturas2 Feature: gene Location: 2953-3243 bp Feature: gene Location: 3259-5613 bp Ori: RGY79094.1 Feature: domain Description: Bac_Flav_CT_G Location: 3337-4843 bp Feature: domain Description: Bac_Flav_CT_G Location: 3337-4843 bp Feature: domain Description: Bac_Flav_CT_G Location: 5242-5554 bp Feature: domain Description: Bac_Flav_CT_G Location: 5242-5554 bp Feature: gene Location: 6184-7830 bp Ori: RGY79095.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6238-6481 bp Feature: domain Description: RVT_N Location: 6238-6481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6526-7171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6526-71 71 bp Feature: domain Description: GIIM Note: maturase Location: 7225-7456 bp Feature: domain Description: GIIM Note: maturase Location: 7225-7456 bp Feature: gene Location: 7839-7952 bp Feature: gene Location: 8064-8825 bp Ori: RGY79096.1 Feature: domain Description: MPP_MS158 Location: 8073-8772 bp Feature: domain Description: MPP_MS1 58 Location: 8073-8772 bp Feature: gene Location: 10977-11450 bp Feature: gene Location: 11488-11679 bp Feature: domain Description: DUF4134 Location: 11497-11680 bp Feature: domain Description: DUF41 34 Location: 1 1 497-1 1 680 bp Feature: gene Location: 11679-12662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11742-11940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 742-1 1 940 bp Feature: domain Description: Intron_maturas2 Location: 12009-12321 bp Feature: domain Description: Intron_maturas2 Location: 1 2009-1 2321 bp Feature: gene Location: 12652-12801 bp Feature: gene Location: 12835-13544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MPP_MS158 (cd07404), DUF4134 (pfam13572), Intron_maturas2 (pfam01348)

Seq: QSDJ01000088.1 Bacteroides vulgatus strain CF01-10 CF01-10.Scaf88, whole genome shotgun sequence (11455 bp)
Overview 1 RT 1: 8349-11256 bp Neighborhood of RT #1 [8349, 11455] INTN1_C_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Feature: gene Location: 8349-8696 bp Ori: RGY77560.1 Feature: domain Description: INTN1_C_like Location: 8520-8652 bp Feature: domain Description: INTN1_C_like Location: 852 0-8652 bp Feature: gene Location: 8813-9988 bp Ori: RGY77562.1 Feature: domain Description: Arm-DNA-bind_5 Location: 8846-9092 bp Feature: domain Description: Arm-DNA-bind_5 Location: 8846-9092 bp Feature: domain Description: Phage_int_SAM_5 Location: 9140-9440 bp Feature: domain Description: Phage_int_SAM_5 Location: 9140-9440 bp Feature: domain Description: INTN1_C_like Location: 9503-9971 bp Feature: domain Description: INTN1_C_like Location: 9503-9971 bp Feature: gene Location: 10539-11455 bp Ori: RGY77561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10803-11256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10803-112 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), RVT-GII

Seq: QSDJ01000001.1 Bacteroides vulgatus strain CF01-10 CF01-10.Scaf1, whole genome shotgun sequence (184572 bp)
Overview 1 RT 1: 62120-66190 bp Neighborhood of RT #1 [62120, 66267] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 62120-62362 bp Feature: gene Location: 62566-63051 bp Feature: gene Location: 63048-64349 bp Ori: RGY84238.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63261-63855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63 261-63 855 bp Feature: gene Location: 64725-64958 bp Feature: gene Location: 65056-66267 bp Ori: RGY84240.1 Feature: domain Description: TipAS Location: 65080-65383 bp Feature: domain Description: TipAS Location: 65080-653 83 bp Feature: domain Description: COG2369 Location: 65503-65689 bp Feature: domain Description: COG23 69 Location: 65503 -65689 bp Feature: domain Description: LPD3 Location: 65908-66190 bp Feature: domain Description: LPD3 Location: 65908-66190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: QSDJ01000023.1 Bacteroides vulgatus strain CF01-10 CF01-10.Scaf23, whole genome shotgun sequence (76652 bp)
Overview 1 RT 1: 27239-30377 bp Neighborhood of RT #1 [27239, 30415] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 27239-27484 bp Feature: gene Location: 27493-27975 bp Feature: gene Location: 28044-29531 bp Ori: RGY81144.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28428-29031 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 284 28-29031 bp Feature: gene Location: 29772-30074 bp Ori: RGY81145.1 Feature: domain Description: HTH_XRE Location: 29877-30036 bp Feature: domain Description: HTH_XRE Location: 29877-30036 bp Feature: gene Location: 30071-30415 bp Ori: RGY81146.1 Feature: domain Description: Gp49 Location: 30116-30377 bp Feature: domain Description: Gp4 9 Location: 30116-30377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)