myRT

myRT report for GCA_003463705.1_ASM346370v1

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Seq: QSDQ01000073.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf73, whole genome shotgun sequence (31273 bp)
Overview 1 RT 1: 3629-8397 bp Neighborhood of RT #1 [3629, 8397] SpoVG SpoVG RVT-GII Intron_maturas2 YodL Feature: gene Location: 3629-3964 bp Feature: domain Description: SpoVG Location: 3632-3884 bp Feature: domain Description: SpoVG Location: 3632-3884 bp Feature: gene Location: 4072-4749 bp Feature: domain Description: SpoVG Location: 4387-4627 bp Feature: domain Description: SpoVG Location: 4387-4627 bp Feature: gene Location: 5049-6491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5328-5949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5328-5949 bp Feature: domain Description: Intron_maturas2 Location: 6096-6345 bp Feature: domain Description: Intron_maturas2 Location: 6096-6345 bp Feature: gene Location: 7245-7803 bp Feature: domain Description: YodL Location: 7470-7719 bp Feature: domain Description: YodL Location: 7470-771 9 bp Feature: gene Location: 7822-8397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), RVT-GII, Intron_maturas2 (pfam01348), YodL (pfam14191)

Seq: QSDQ01000011.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf11, whole genome shotgun sequence (118213 bp)
Overview 1 RT 1: 60327-65831 bp 2 RT 2: 106346-117205 bp Neighborhood of RT #1 [60327, 65878] Acetyltransf_10 RVT-GII Intron_maturas2 Peptidase_A24 pilus_cpaB Neighborhood of RT #2 [106346, 117246] RVT-GII Intron_maturas2 HNHc PTZ00461 SpoVG SpoVG Feature: gene Location: 60327-60776 bp Feature: domain Description: Acetyltransf_10 Location: 60420-60771 bp Feature: domain Description: Acetyltransf_10 Location: 6042 0-60771 bp Feature: gene Location: 61262-61573 bp Feature: gene Location: 62447-64262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62711-63545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 711-63545 bp Feature: domain Description: Intron_maturas2 Location: 63620-63947 bp Feature: domain Description: Intron_maturas2 Location: 6362 0-63947 bp Feature: gene Location: 64484-64891 bp Feature: domain Description: Peptidase_A24 Location: 64514-64796 bp Feature: domain Description: Peptidase_A2 4 Location: 64514-64796 bp Feature: gene Location: 65081-65878 bp Feature: domain Description: pilus_cpaB Location: 65177-65831 bp Feature: domain Description: pilus_cpaB Location: 65177-65831 bp Feature: gene Location: 106346-106867 bp Feature: gene Location: 106872-113235 bp Feature: gene Location: 113788-115602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114052-114874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114052 -114874 bp Feature: domain Description: Intron_maturas2 Location: 114946-115372 bp Feature: domain Description: Intron_maturas2 Location: 114946-115372 bp Feature: domain Description: HNHc Note: nucleases Location: 115429-115573 bp Feature: domain Description: HNHc Note: nucleases Location: 11542 9-115573 bp Feature: gene Location: 115683-116603 bp Feature: domain Description: PTZ00461 Location: 116160-116418 bp Feature: domain Description: PTZ00461 Location: 116160-116418 bp Feature: gene Location: 116629-117246 bp Feature: domain Description: SpoVG Location: 116641-116896 bp Feature: domain Description: SpoVG Location: 116641-116896 bp Feature: domain Description: SpoVG Location: 116980-117205 bp Feature: domain Description: SpoVG Location: 116980-1172 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-GII, Intron_maturas2 (pfam01348), Peptidase_A24 (pfam01478), pilus_cpaB (TIGR03177), HNHc (smart00507), PTZ00461 (isovaleryl-CoA dehydrogenase; Provisional), SpoVG (pfam04026)

Seq: QSDQ01000046.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf46, whole genome shotgun sequence (60507 bp)
Overview 1 RT 1: 34864-39745 bp 2 RT 2: 41938-47268 bp Neighborhood of RT #1 [34864, 39804] RVT-GII Intron_maturas2 HNHc Spr Neighborhood of RT #2 [41938, 47455] VirB4 RVT_N RVT-GII VirB4_CagE KOG3824 Feature: gene Location: 34864-35804 bp Feature: gene Location: 35896-36174 bp Feature: gene Location: 36449-38236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36716-37526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6716-3 7526 bp Feature: domain Description: Intron_maturas2 Location: 37601-38021 bp Feature: domain Description: Intron_maturas2 Location: 3 7601-3 8021 bp Feature: domain Description: HNHc Note: nucleases Location: 38063-38216 bp Feature: domain Description: HNHc Note: nucleases Location: 3 8063 -3 8216 bp Feature: gene Location: 38441-38686 bp Feature: gene Location: 38827-39804 bp Feature: domain Description: Spr Location: 39379-39745 bp Feature: domain Description: Spr Location: 3 93 79-3 9745 bp Feature: gene Location: 41938-42453 bp Feature: gene Location: 42453-43442 bp Feature: domain Description: VirB4 Location: 42813-43338 bp Feature: domain Description: VirB4 Location: 42813 -43 3 3 8 bp Feature: gene Location: 43522-45194 bp Feature: RT Description: RVT_N Location: 43594-43834 bp Feature: RT Description: RVT_N Location: 43 594-43 83 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43882-44053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 882-44053 bp Feature: gene Location: 45746-46570 bp Feature: domain Description: VirB4_CagE Location: 45842-46559 bp Feature: domain Description: VirB4_CagE Location: 45842-46559 bp Feature: gene Location: 46689-47455 bp Feature: domain Description: KOG3824 Location: 46794-47268 bp Feature: domain Description: KOG3 824 Location: 46794-47268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791), VirB4 (COG3451), RVT_N (pfam13655), VirB4_CagE (TIGR00929), KOG3824 (KOG3824, Huntingtin interacting protein HYPE )

Seq: QSDQ01000003.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf3, whole genome shotgun sequence (196487 bp)
Overview 1 RT 1: 75224-81730 bp Neighborhood of RT #1 [75224, 81759] PRK14806 RAYT RVT-Retrons gde_arch PurR Feature: gene Location: 75224-76501 bp Feature: domain Description: PRK14806 Location: 75245-76478 bp Feature: domain Description: PRK14 806 Location: 7524 5-764 78 bp Feature: gene Location: 76719-77174 bp Feature: domain Description: RAYT Location: 76737-77115 bp Feature: domain Description: RAYT Location: 76737-77115 bp Feature: gene Location: 77372-78385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77537-78092 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77537-78092 bp Feature: gene Location: 78766-80744 bp Feature: domain Description: gde_arch Location: 78832-80533 bp Feature: domain Description: gde_arch Location: 78832-80533 bp Feature: gene Location: 80770-81759 bp Feature: domain Description: PurR Location: 80779-81730 bp Feature: domain Description: PurR Location: 80779-81730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), RAYT (COG1943), RVT-Retrons, gde_arch (TIGR01561), PurR (COG1609)

Seq: QSDQ01000232.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf232, whole genome shotgun sequence (859 bp)
Overview 1 RT 1: 40-853 bp Neighborhood of RT #1 [40, 859] RVT-GII GIIM Feature: gene Location: 40-859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-5 98 bp Feature: domain Description: GIIM Note: maturase Location: 652-853 bp Feature: domain Description: GIIM Note: maturase Location: 65 2-85 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSDQ01000044.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf44, whole genome shotgun sequence (61588 bp)
Overview 1 RT 1: 1163-3757 bp Neighborhood of RT #1 [1163, 3762] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 1163-1378 bp Feature: domain Description: Phage_holin_Dp1 Location: 1172-1358 bp Feature: domain Description: Phage_holin_Dp1 Location: 1172-1358 bp Feature: gene Location: 1365-1700 bp Feature: gene Location: 1726-2922 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1921-2644 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1921-26 44 bp Feature: gene Location: 3128-3622 bp Feature: gene Location: 3619-3762 bp Feature: domain Description: Phage_XkdX Location: 3640-3757 bp Feature: domain Description: Phage_XkdX Location: 36 40-3757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QSDQ01000185.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf185, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 90-1104 bp Neighborhood of RT #1 [90, 1692] RVT-GII Feature: gene Location: 90-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSDQ01000180.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf180, whole genome shotgun sequence (1851 bp)
Overview 1 RT 1: 27-1592 bp Neighborhood of RT #1 [27, 1765] RVT-GII GIIM Feature: gene Location: 27-338 bp Feature: gene Location: 485-1765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1310 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1592 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSDQ01000157.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf157, whole genome shotgun sequence (3167 bp)
Overview 1 RT 1: 120-3106 bp Neighborhood of RT #1 [120, 3108] Maff2 RVT-GII HNHc Maff2 Feature: gene Location: 120-221 bp Feature: domain Description: Maff2 Location: 123-213 bp Feature: domain Description: Maff2 Location: 123-213 bp Feature: gene Location: 371-2257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704-1442 bp Feature: domain Description: HNHc Note: nucleases Location: 1991-2141 bp Feature: domain Description: HNHc Note: nucleases Location: 19 9 1-2141 bp Feature: gene Location: 2977-3108 bp Feature: domain Description: Maff2 Location: 2980-3106 bp Feature: domain Description: Maff2 Location: 29 80-3106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: QSDQ01000064.1 Hungatella hathewayi strain AM58-2 AM58-2.Scaf64, whole genome shotgun sequence (39925 bp)
Overview 1 RT 1: 4604-9966 bp 2 RT 2: 18849-31113 bp Neighborhood of RT #1 [4604, 10250] RVT-GII HNHc VirD4 Neighborhood of RT #2 [18849, 31826] COG4646 KOG1000 RVT-GII HNHc RVT-GII TnpV ParB_N_like Feature: gene Location: 4604-4834 bp Feature: gene Location: 4877-5062 bp Feature: gene Location: 5116-6987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5431-6157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5431-6157 bp Feature: domain Description: HNHc Note: nucleases Location: 6709-6877 bp Feature: domain Description: HNHc Note: nucleases Location: 6709-6877 bp Feature: gene Location: 7742-8014 bp Feature: gene Location: 7998-10250 bp Feature: domain Description: VirD4 Location: 8727-9966 bp Feature: domain Description: VirD4 Location: 8727-9966 bp Feature: gene Location: 18849-22946 bp Feature: domain Description: COG4646 Location: 18942-21636 bp Feature: domain Description: COG4646 Location: 18942-21636 bp Feature: domain Description: KOG1000 Location: 21906-22206 bp Feature: domain Description: KOG10 00 Location: 21906-22206 bp Feature: gene Location: 22906-23202 bp Feature: gene Location: 23288-25158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23609-24344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23609-24344 bp Feature: domain Description: HNHc Note: nucleases Location: 24899-25040 bp Feature: domain Description: HNHc Note: nucleases Location: 24899-25040 bp Feature: gene Location: 25837-26802 bp Feature: gene Location: 27296-29112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27560-28298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27560-28298 bp Feature: gene Location: 29551-29928 bp Feature: domain Description: TnpV Location: 29584-29914 bp Feature: domain Description: TnpV Location: 29584-29914 bp Feature: gene Location: 30675-31826 bp Feature: domain Description: ParB_N_like Location: 30867-31113 bp Feature: domain Description: ParB_N_like Location: 30867-31113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirD4 (COG3505), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), TnpV (pfam14198), ParB_N_like (cd16411)