myRT

myRT report for GCA_003463715.1_ASM346371v1

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Seq: QSDT01000058.1 Bacteroides ovatus strain AM54-35XD AM54-35XD.Scaf58, whole genome shotgun sequence (30009 bp)
Overview 1 RT 1: 18081-26770 bp Neighborhood of RT #1 [18081, 26967] DUF1896 N6_Mtase RVT_N RVT-GII GIIM Spc7 Spc7 YhcG Feature: gene Location: 18081-18590 bp Ori: RGZ09156.1 Feature: domain Description: DUF1896 Location: 18171-18579 bp Feature: domain Description: DUF1 896 Location: 1 81 71 -1 8579 bp Feature: gene Location: 18577-22267 bp Feature: domain Description: N6_Mtase Location: 18868-19510 bp Feature: domain Description: N6_Mtase Location: 1 8868-1 951 0 bp Feature: gene Location: 22947-24614 bp Ori: RGZ09157.1 Gene: ltrA Feature: domain Description: RVT_N Location: 23001-23244 bp Feature: domain Description: RVT_N Location: 23001 -23244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23289-23937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23289-23937 bp Feature: domain Description: GIIM Note: maturase Location: 23991-24222 bp Feature: domain Description: GIIM Note: maturase Location: 23991 -24222 bp Feature: gene Location: 24733-25890 bp Feature: domain Description: Spc7 Location: 25006-25201 bp Feature: domain Description: Spc7 Location: 25006-25201 bp Feature: domain Description: Spc7 Location: 25498-25738 bp Feature: domain Description: Spc7 Location: 25498-25738 bp Feature: gene Location: 25954-26967 bp Ori: RGZ09167.1 Feature: domain Description: YhcG Location: 26287-26770 bp Feature: domain Description: YhcG Location: 26287-26770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Spc7 (smart00787), YhcG (COG4804)

Seq: QSDT01000002.1 Bacteroides ovatus strain AM54-35XD AM54-35XD.Scaf2, whole genome shotgun sequence (331609 bp)
Overview 1 RT 1: 262141-266073 bp 2 RT 2: 327217-330661 bp Neighborhood of RT #1 [262141, 266073] RVT-UG27 Neighborhood of RT #2 [327217, 331047] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 262141-262788 bp Feature: gene Location: 262802-263470 bp Feature: gene Location: 263463-264724 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 263655-263967 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 2 63655-2 63967 bp Feature: gene Location: 265047-265544 bp Feature: gene Location: 265594-266073 bp Feature: gene Location: 327217-327579 bp Ori: RGZ15669.1 Feature: domain Description: DUF3876 Location: 327277-327541 bp Feature: domain Description: DUF3876 Location: 32 72 77-32 7541 bp Feature: gene Location: 327638-329353 bp Ori: RGZ15645.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 327770-329336 bp Feature: domain Description: Bac_Flav_CT_G Location: 32 7770-32 9336 bp Feature: gene Location: 329338-331047 bp Ori: RGZ15646.1 Gene: ltrA Feature: domain Description: RVT_N Location: 329440-329683 bp Feature: domain Description: RVT_N Location: 32 9440-32 9683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329728-330376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 972 8-330376 bp Feature: domain Description: GIIM Note: maturase Location: 330430-330661 bp Feature: domain Description: GIIM Note: maturase Location: 330430-330661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSDT01000041.1 Bacteroides ovatus strain AM54-35XD AM54-35XD.Scaf41, whole genome shotgun sequence (55652 bp)
Overview 1 RT 1: 42334-47319 bp Neighborhood of RT #1 [42334, 47324] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Feature: gene Location: 42334-42507 bp Ori: RGZ10418.1 Feature: domain Description: Bac_Flav_CT_G Location: 42337-42493 bp Feature: domain Description: Bac_Flav_CT_G Location: 423 3 7-42493 bp Feature: gene Location: 42514-42792 bp Ori: RGZ10419.1 Feature: domain Description: Bac_Flav_CT_G Location: 42532-42790 bp Feature: domain Description: Bac_Flav_CT_G Location: 4253 2-42790 bp Feature: gene Location: 42870-44681 bp Ori: RGZ10420.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43134-43956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 13 4-43 956 bp Feature: domain Description: Intron_maturas2 Location: 44031-44346 bp Feature: domain Description: Intron_maturas2 Location: 4403 1-443 46 bp Feature: domain Description: HNHc Note: nucleases Location: 44502-44652 bp Feature: domain Description: HNHc Note: nucleases Location: 44502-44652 bp Feature: gene Location: 45303-47135 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 45306-47136 bp Feature: domain Description: Bac_Flav_CT_G Location: 453 06-4713 6 bp Feature: gene Location: 47154-47324 bp Ori: RGZ10421.1 Feature: domain Description: DUF3875 Location: 47163-47319 bp Feature: domain Description: DUF3 875 Location: 47163 -473 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991)

Seq: QSDT01000011.1 Bacteroides ovatus strain AM54-35XD AM54-35XD.Scaf11, whole genome shotgun sequence (168336 bp)
Overview 1 RT 1: 24723-28961 bp Neighborhood of RT #1 [24723, 28996] Mfa_like_1 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 24723-26002 bp Feature: domain Description: Mfa_like_1 Location: 24795-25206 bp Feature: domain Description: Mfa_like_1 Location: 24 795-25206 bp Feature: gene Location: 26339-26659 bp Ori: RGZ13009.1 Feature: domain Description: HTH_28 Location: 26393-26537 bp Feature: domain Description: HTH_28 Location: 26393-26537 bp Feature: gene Location: 26750-26947 bp Ori: RGZ13010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26753-26945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26753-2694 5 bp Feature: gene Location: 26925-27302 bp Ori: RGZ13011.1 Feature: domain Description: RVT_N Location: 26928-27153 bp Feature: domain Description: RVT_N Location: 26928-27153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27207-27276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27207-27276 bp Feature: gene Location: 27316-27552 bp Feature: gene Location: 28247-28996 bp Ori: RGZ13013.1 Feature: domain Description: GDPD_like_2 Location: 28304-28961 bp Feature: domain Description: GDPD_like_2 Location: 28304 -28961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)

Seq: QSDT01000030.1 Bacteroides ovatus strain AM54-35XD AM54-35XD.Scaf30, whole genome shotgun sequence (77553 bp)
Overview 1 RT 1: 65012-77276 bp Neighborhood of RT #1 [65012, 77401] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 RVT-Retrons PDDEXK_2 Feature: gene Location: 65012-66814 bp Ori: RGZ11057.1 Feature: domain Description: rpsA Location: 65081-66698 bp Feature: domain Description: rpsA Location: 65 081-66698 bp Feature: gene Location: 66911-72866 bp Feature: domain Description: DUF4011 Location: 68141-68654 bp Feature: domain Description: DUF4011 Location: 68141-6865 4 bp Feature: domain Description: DEXXQc_SF1 Location: 68993-69959 bp Feature: domain Description: DEXXQc_SF1 Location: 68993-6995 9 bp Feature: domain Description: DEXXQc_SF1 Location: 70421-71180 bp Feature: domain Description: DEXXQc_SF1 Location: 70421-71180 bp Feature: domain Description: TIGR00376 Location: 71312-71699 bp Feature: domain Description: TIGR00376 Location: 71312-71699 bp Feature: domain Description: MTES_1575 Location: 71852-72131 bp Feature: domain Description: MTES_15 75 Location: 7185 2-72131 bp Feature: gene Location: 72868-73998 bp Ori: RGZ11058.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73189-73732 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73189-73732 bp Feature: gene Location: 74203-76365 bp Feature: gene Location: 76577-77401 bp Ori: RGZ11059.1 Feature: domain Description: PDDEXK_2 Location: 76598-77276 bp Feature: domain Description: PDDEXK_2 Location: 765 98-77276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: QSDT01000096.1 Bacteroides ovatus strain AM54-35XD AM54-35XD.Scaf96, whole genome shotgun sequence (4276 bp)
Overview 1 RT 1: 1-3533 bp Neighborhood of RT #1 [1, 3559] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 1-956 bp Feature: gene Location: 1504-3327 bp Ori: RGZ06089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176 8-2590 bp Feature: domain Description: Intron_maturas2 Location: 2764-2965 bp Feature: domain Description: Intron_maturas2 Location: 276 4-296 5 bp Feature: domain Description: HNHc Note: nucleases Location: 3118-3289 bp Feature: domain Description: HNHc Note: nucleases Location: 3118-3289 bp Feature: gene Location: 3331-3432 bp Feature: gene Location: 3428-3559 bp Feature: domain Description: Bac_Flav_CT_G Location: 3431-3533 bp Feature: domain Description: Bac_Flav_CT_G Location: 3431-3533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)