myRT

myRT report for GCA_003463775.1_ASM346377v1

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Seq: QSDW01000055.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf55, whole genome shotgun sequence (36316 bp)
Overview 1 RT 1: 253-2844 bp 2 RT 2: 16931-25194 bp Neighborhood of RT #1 [253, 2888] COG3943 RVT-GII RVT-GII GIIM HTH_17 Neighborhood of RT #2 [16931, 25208] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 253-618 bp Ori: RGZ21436.1 Feature: domain Description: COG3943 Location: 298-562 bp Feature: domain Description: COG3943 Location: 298-562 bp Feature: gene Location: 1081-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 7-1 549 bp Feature: gene Location: 1808-2041 bp Ori: RGZ21476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811-2030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 1 -2030 bp Feature: gene Location: 2105-2482 bp Ori: RGZ21437.1 Feature: domain Description: GIIM Note: maturase Location: 2108-2318 bp Feature: domain Description: GIIM Note: maturase Location: 21 08-231 8 bp Feature: gene Location: 2571-2888 bp Ori: RGZ21438.1 Feature: domain Description: HTH_17 Location: 2703-2844 bp Feature: domain Description: HTH_1 7 Location: 2703-2844 bp Feature: gene Location: 16931-17245 bp Ori: RGZ21457.1 Feature: domain Description: DUF3876 Location: 16985-17234 bp Feature: domain Description: DUF3876 Location: 1 6985-1 7234 bp Feature: gene Location: 17260-18965 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 17392-18862 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 7392-1 8862 bp Feature: gene Location: 18950-20659 bp Ori: RGZ21458.1 Gene: ltrA Feature: domain Description: RVT_N Location: 19052-19295 bp Feature: domain Description: RVT_N Location: 1 9052-1 9295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19340-19988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9340-1 9988 bp Feature: domain Description: GIIM Note: maturase Location: 20042-20273 bp Feature: domain Description: GIIM Note: maturase Location: 20042-20273 bp Feature: gene Location: 21213-22133 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 21216-22134 bp Feature: domain Description: Bac_Flav_CT_G Location: 21 21 6-221 34 bp Feature: gene Location: 22130-22465 bp Ori: RGZ21459.1 Feature: domain Description: DUF4133 Location: 22157-22424 bp Feature: domain Description: DUF41 33 Location: 221 57-22424 bp Feature: gene Location: 22477-22719 bp Ori: RGZ21460.1 Feature: domain Description: DUF4134 Location: 22624-22714 bp Feature: domain Description: DUF41 34 Location: 22624-2271 4 bp Feature: gene Location: 22716-24371 bp Ori: RGZ21461.1 Gene: ltrA Feature: domain Description: RVT_N Location: 22773-23010 bp Feature: domain Description: RVT_N Location: 22773-2301 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23061-23709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23061 -23709 bp Feature: domain Description: GIIM Note: maturase Location: 23766-23997 bp Feature: domain Description: GIIM Note: maturase Location: 23766-23997 bp Feature: gene Location: 24667-24966 bp Feature: gene Location: 24987-25208 bp Ori: RGZ21463.1 Feature: domain Description: DUF4134 Location: 25017-25194 bp Feature: domain Description: DUF41 34 Location: 2501 7-251 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), DUF4133 (pfam13571), DUF4134 (pfam13572)

Seq: QSDW01000005.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf5, whole genome shotgun sequence (144186 bp)
Overview 1 RT 1: 84759-88691 bp Neighborhood of RT #1 [84759, 88691] RVT-UG27 Feature: gene Location: 84759-85406 bp Feature: gene Location: 85420-86088 bp Feature: gene Location: 86081-87342 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 86273-86585 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 862 73-86585 bp Feature: gene Location: 87665-88162 bp Feature: gene Location: 88212-88691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSDW01000123.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf123, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 124-1588 bp Neighborhood of RT #1 [124, 1932] RVT-GII Intron_maturas2 Feature: gene Location: 124-1932 bp Ori: RGZ19008.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 88-1210 bp Feature: domain Description: Intron_maturas2 Location: 1333-1588 bp Feature: domain Description: Intron_maturas2 Location: 13 3 3 -1588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSDW01000011.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf11, whole genome shotgun sequence (111095 bp)
Overview 1 RT 1: 64261-67461 bp Neighborhood of RT #1 [64261, 67461] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 64261-64605 bp Ori: RGZ27180.1 Feature: domain Description: Gp49 Location: 64315-64573 bp Feature: domain Description: Gp4 9 Location: 64 315-64 573 bp Feature: gene Location: 64610-64921 bp Ori: RGZ27181.1 Feature: domain Description: HTH_XRE Location: 64724-64877 bp Feature: domain Description: HTH_XRE Location: 64 724 -64 877 bp Feature: gene Location: 65168-66658 bp Ori: RGZ27182.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65561-66158 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65561-66158 bp Feature: gene Location: 66726-67232 bp Feature: gene Location: 67216-67461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: QSDW01000015.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf15, whole genome shotgun sequence (103514 bp)
Overview 1 RT 1: 54537-68351 bp Neighborhood of RT #1 [54537, 68467] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 rpsA Feature: gene Location: 54537-56725 bp Feature: domain Description: GlnA3 Location: 54609-56373 bp Feature: domain Description: GlnA3 Location: 5 4609-5 6373 bp Feature: gene Location: 57119-59280 bp Feature: gene Location: 59482-60612 bp Ori: RGZ26316.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59803-60355 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 9803-6035 5 bp Feature: gene Location: 60609-66502 bp Feature: domain Description: DUF4011 Location: 61767-62280 bp Feature: domain Description: DUF4011 Location: 61767-62280 bp Feature: domain Description: DEXXQc_SF1 Location: 62619-63234 bp Feature: domain Description: DEXXQc_SF1 Location: 62619-63234 bp Feature: gene Location: 66671-68467 bp Ori: RGZ26317.1 Feature: domain Description: rpsA Location: 66737-68351 bp Feature: domain Description: rpsA Location: 66737-6835 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), rpsA (TIGR00717)

Seq: QSDW01000050.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf50, whole genome shotgun sequence (44248 bp)
Overview 1 RT 1: 12550-19122 bp Neighborhood of RT #1 [12550, 19122] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 12550-13843 bp Feature: domain Description: Relaxase Location: 12727-12967 bp Feature: domain Description: Relaxase Location: 12727-1296 7 bp Feature: gene Location: 14190-15113 bp Ori: RGZ21871.1 Feature: domain Description: YWFCY Location: 14196-14373 bp Feature: domain Description: YWFCY Location: 14196 -14373 bp Feature: gene Location: 15750-17402 bp Ori: RGZ21872.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15804-16047 bp Feature: domain Description: RVT_N Location: 15804-16 047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16092-16740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 092-16 740 bp Feature: domain Description: GIIM Note: maturase Location: 16794-17025 bp Feature: domain Description: GIIM Note: maturase Location: 16 794-17025 bp Feature: gene Location: 17407-18612 bp Ori: RGZ21873.1 Feature: domain Description: TraG-D_C Location: 17989-18322 bp Feature: domain Description: TraG-D_C Location: 17989-18322 bp Feature: gene Location: 18727-19122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSDW01000068.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf68, whole genome shotgun sequence (22611 bp)
Overview 1 RT 1: 738-2920 bp Neighborhood of RT #1 [738, 2920] RVT-GII GIIM Feature: gene Location: 738-2033 bp Ori: RGZ20725.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933-1548 bp Feature: domain Description: GIIM Note: maturase Location: 1620-1833 bp Feature: domain Description: GIIM Note: maturase Location: 1620-1833 bp Feature: gene Location: 2376-2579 bp Feature: gene Location: 2612-2920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSDW01000032.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf32, whole genome shotgun sequence (71958 bp)
Overview 1 RT 1: 36759-41510 bp Neighborhood of RT #1 [36759, 41510] Avd_like RVT-DGRs MutS_I Feature: gene Location: 36759-37133 bp Ori: RGZ23625.1 Feature: domain Description: Avd_like Location: 36786-37092 bp Feature: domain Description: Avd_like Location: 3678 6-37092 bp Feature: gene Location: 37423-37648 bp Feature: gene Location: 37645-38685 bp Ori: RGZ23603.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37651-38341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37651-38 341 bp Feature: gene Location: 38682-39158 bp Ori: RGZ23604.1 Feature: domain Description: MutS_I Location: 38733-38928 bp Feature: domain Description: MutS_I Location: 38 733-38 928 bp Feature: gene Location: 39220-41510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624)

Seq: QSDW01000020.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf20, whole genome shotgun sequence (95995 bp)
Overview 1 RT 1: 30398-35008 bp 2 RT 2: 71590-79675 bp Neighborhood of RT #1 [30398, 35028] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Neighborhood of RT #2 [71590, 79752] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 Feature: gene Location: 30398-30772 bp Feature: gene Location: 30825-32155 bp Feature: domain Description: MPTase-PolyVal Location: 31107-31416 bp Feature: domain Description: MPTase-PolyVal Location: 31107-31416 bp Feature: gene Location: 32145-33956 bp Ori: RGZ25499.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32409-33231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32409 -33231 bp Feature: domain Description: Intron_maturas2 Location: 33369-33606 bp Feature: domain Description: Intron_maturas2 Location: 33369 -33606 bp Feature: gene Location: 33997-34420 bp Feature: gene Location: 34537-35028 bp Feature: domain Description: DUF1738 Location: 34591-35008 bp Feature: domain Description: DUF1738 Location: 3459 1-35008 bp Feature: gene Location: 71590-74136 bp Feature: gene Location: 74148-74689 bp Feature: domain Description: Bac_Flav_CT_G Location: 74166-74589 bp Feature: domain Description: Bac_Flav_CT_G Location: 74166-74589 bp Feature: gene Location: 74767-76578 bp Ori: RGZ25534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75031-75853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75031-75853 bp Feature: domain Description: Intron_maturas2 Location: 75928-76243 bp Feature: domain Description: Intron_maturas2 Location: 759 28-76243 bp Feature: domain Description: HNHc Note: nucleases Location: 76399-76549 bp Feature: domain Description: HNHc Note: nucleases Location: 7639 9 -76549 bp Feature: gene Location: 77152-79344 bp Feature: domain Description: Bac_Flav_CT_G Location: 77302-78766 bp Feature: domain Description: Bac_Flav_CT_G Location: 77302-78766 bp Feature: domain Description: Bac_Flav_CT_G Location: 78922-79345 bp Feature: domain Description: Bac_Flav_CT_G Location: 789 22-79 345 bp Feature: gene Location: 79456-79752 bp Ori: RGZ25535.1 Feature: domain Description: DUF4133 Location: 79498-79675 bp Feature: domain Description: DUF4133 Location: 79 49 8-79 675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401), Bac_Flav_CT_G (TIGR03783), HNHc (smart00507), DUF4133 (pfam13571)

Seq: QSDW01000021.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf21, whole genome shotgun sequence (95674 bp)
Overview 1 RT 1: 67827-71427 bp Neighborhood of RT #1 [67827, 71573] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 67827-68996 bp Feature: gene Location: 69073-69437 bp Feature: gene Location: 69683-70693 bp Ori: RGZ25299.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 69893-70481 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 69893-70481 bp Feature: gene Location: 70713-71078 bp Feature: gene Location: 71082-71573 bp Ori: RGZ25301.1 Feature: domain Description: Phage_holin_4_1 Location: 71133-71427 bp Feature: domain Description: Phage_holin_4_1 Location: 71133-71427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: QSDW01000112.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf112, whole genome shotgun sequence (3537 bp)
Overview 1 RT 1: 316-3537 bp Neighborhood of RT #1 [316, 3537] DUF3876 DUF4141 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 316-699 bp Ori: RGZ19253.1 Feature: domain Description: DUF3876 Location: 397-661 bp Feature: domain Description: DUF3876 Location: 397-661 bp Feature: gene Location: 730-957 bp Ori: RGZ19254.1 Feature: domain Description: DUF4141 Location: 742-898 bp Feature: domain Description: DUF4141 Location: 742-898 bp Feature: gene Location: 1508-3313 bp Ori: RGZ19255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772-2594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1772-2594 bp Feature: domain Description: Intron_maturas2 Location: 2753-3122 bp Feature: domain Description: Intron_maturas2 Location: 2753-3122 bp Feature: domain Description: HNHc Note: nucleases Location: 3146-3287 bp Feature: domain Description: HNHc Note: nucleases Location: 3146-3287 bp Feature: gene Location: 3306-3537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSDW01000073.1 Bacteroides caccae strain AM54-1GN AM54-1GN.Scaf73, whole genome shotgun sequence (19765 bp)
Overview 1 RT 1: 12955-18278 bp Neighborhood of RT #1 [12955, 19002] PRK11179 DUF4491 RVT_N RVT-GII GIIM DUF772 HNH_3 Feature: gene Location: 12955-13419 bp Ori: RGZ20572.1 Feature: domain Description: PRK11179 Location: 12964-13399 bp Feature: domain Description: PRK11179 Location: 12 964-13399 bp Feature: gene Location: 13424-13735 bp Ori: RGZ20573.1 Feature: domain Description: DUF4491 Location: 13451-13721 bp Feature: domain Description: DUF4491 Location: 13451-13721 bp Feature: gene Location: 14831-16321 bp Ori: RGZ20574.1 Gene: ltrA Feature: domain Description: RVT_N Location: 14900-15140 bp Feature: domain Description: RVT_N Location: 14900-15140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15188-15833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15188-15833 bp Feature: domain Description: GIIM Note: maturase Location: 15887-16121 bp Feature: domain Description: GIIM Note: maturase Location: 15887-1612 1 bp Feature: gene Location: 16517-17459 bp Feature: domain Description: DUF772 Location: 16706-16889 bp Feature: domain Description: DUF772 Location: 16706-16889 bp Feature: gene Location: 17948-19002 bp Feature: domain Description: HNH_3 Location: 18143-18278 bp Feature: domain Description: HNH_3 Location: 18143-18278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11179 (DNA-binding transcriptional regulator AsnC; Provisional), DUF4491 (pfam14898), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), HNH_3 (pfam13392)