myRT

myRT report for GCA_003463785.1_ASM346378v1

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Seq: QSDX01000003.1 Parabacteroides distasonis strain AM54-10XD AM54-10XD.Scaf3, whole genome shotgun sequence (278476 bp)
Overview 1 RT 1: 93170-98196 bp Neighborhood of RT #1 [93170, 98196] RVT-DGRs Feature: gene Location: 93170-94609 bp Feature: gene Location: 94622-95035 bp Feature: gene Location: 95093-96607 bp Ori: RGZ26534.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95300-96047 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95300-96047 bp Feature: gene Location: 96674-97396 bp Feature: gene Location: 97393-98196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSDX01000020.1 Parabacteroides distasonis strain AM54-10XD AM54-10XD.Scaf20, whole genome shotgun sequence (96010 bp)
Overview 1 RT 1: 85439-91421 bp Neighborhood of RT #1 [85439, 91435] RVT-UG24 dnaG Feature: gene Location: 85439-86056 bp Feature: gene Location: 86154-86429 bp Feature: gene Location: 86562-89987 bp Ori: RGZ23235.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 87075-87543 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 87075-87543 bp Feature: gene Location: 90030-90683 bp Feature: gene Location: 90689-91435 bp Ori: RGZ23237.1 Feature: domain Description: dnaG Location: 90776-91421 bp Feature: domain Description: dnaG Location: 90776-9142 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24, dnaG (TIGR01391)

Seq: QSDX01000070.1 Parabacteroides distasonis strain AM54-10XD AM54-10XD.Scaf70, whole genome shotgun sequence (3865 bp)
Overview 1 RT 1: 222-3865 bp Neighborhood of RT #1 [222, 3865] Dam RVT-DGRs Feature: gene Location: 222-1064 bp Ori: RGZ19867.1 Feature: domain Description: Dam Location: 225-993 bp Feature: domain Description: Dam Location: 225-993 bp Feature: gene Location: 1251-1661 bp Feature: gene Location: 1675-3018 bp Ori: RGZ19869.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1885-2476 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1885-2476 bp Feature: gene Location: 3515-3865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs

Seq: QSDX01000028.1 Parabacteroides distasonis strain AM54-10XD AM54-10XD.Scaf28, whole genome shotgun sequence (81601 bp)
Overview 1 RT 1: 70745-75241 bp Neighborhood of RT #1 [70745, 75279] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Feature: gene Location: 70745-71749 bp Ori: RGZ22237.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 70751-71720 bp Feature: domain Description: Bac_Flav_CT_J Location: 70751-71720 bp Feature: gene Location: 71753-72289 bp Feature: gene Location: 72282-74087 bp Ori: RGZ22246.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72546-73368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7254 6-73368 bp Feature: domain Description: Intron_maturas2 Location: 73527-73896 bp Feature: domain Description: Intron_maturas2 Location: 73527-73896 bp Feature: domain Description: HNHc Note: nucleases Location: 73920-74061 bp Feature: domain Description: HNHc Note: nucleases Location: 73920-74 061 bp Feature: gene Location: 74638-74865 bp Ori: RGZ22247.1 Feature: domain Description: DUF4141 Location: 74650-74806 bp Feature: domain Description: DUF4 14 1 Location: 74 650-74 806 bp Feature: gene Location: 74896-75279 bp Ori: RGZ22248.1 Feature: domain Description: DUF3876 Location: 74977-75241 bp Feature: domain Description: DUF3876 Location: 74 977-7524 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992)

Seq: QSDX01000001.1 Parabacteroides distasonis strain AM54-10XD AM54-10XD.Scaf1, whole genome shotgun sequence (417226 bp)
Overview 1 RT 1: 90550-94487 bp Neighborhood of RT #1 [90550, 94487] RVT-DGRs Feature: gene Location: 90550-90930 bp Feature: gene Location: 90927-91355 bp Feature: gene Location: 91318-92505 bp Ori: RGZ27427.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91651-92278 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9165 1-92278 bp Feature: gene Location: 92838-94199 bp Feature: gene Location: 94209-94487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSDX01000011.1 Parabacteroides distasonis strain AM54-10XD AM54-10XD.Scaf11, whole genome shotgun sequence (119028 bp)
Overview 1 RT 1: 6546-12028 bp Neighborhood of RT #1 [6546, 15802] TetM_like Spc7 RVT_N RVT-GII GIIM N6_Mtase Feature: gene Location: 6546-6866 bp Feature: domain Description: TetM_like Location: 6561-6864 bp Feature: domain Description: TetM_like Location: 6 56 1-6 86 4 bp Feature: gene Location: 7524-8789 bp Ori: RGZ24493.1 Feature: domain Description: Spc7 Location: 8400-8667 bp Feature: domain Description: Spc7 Location: 8400-86 6 7 bp Feature: gene Location: 8791-10458 bp Gene: ltrA Feature: domain Description: RVT_N Location: 8845-9088 bp Feature: domain Description: RVT_N Location: 8845-9088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9133-9781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9133-9781 bp Feature: domain Description: GIIM Note: maturase Location: 9835-10048 bp Feature: domain Description: GIIM Note: maturase Location: 9835-10048 bp Feature: gene Location: 10424-10627 bp Feature: gene Location: 11116-15802 bp Feature: domain Description: N6_Mtase Location: 11428-12028 bp Feature: domain Description: N6 _Mtase Location: 11428-12028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetM_like (cd04168), Spc7 (smart00787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384)