myRT

myRT report for GCA_003463835.1_ASM346383v1

Download annotations/find similar RTs

Seq: QSEA01000081.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf81, whole genome shotgun sequence (1241 bp)
Overview 1 RT 1: 536-1232 bp Neighborhood of RT #1 [536, 1241] RVT-GII Feature: gene Location: 536-1241 bp Ori: RGZ29403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800-1232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800-1 232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSEA01000094.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf94, whole genome shotgun sequence (541 bp)
Overview 1 RT 1: 1-490 bp Neighborhood of RT #1 [1, 541] RVT-GII Feature: gene Location: 1-541 bp Ori: RGZ29194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSEA01000002.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf2, whole genome shotgun sequence (243272 bp)
Overview 1 RT 1: 34696-41052 bp Neighborhood of RT #1 [34696, 41354] DUF2971 COG3943 RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like APH Feature: gene Location: 34696-35709 bp Ori: RGZ35248.1 Feature: domain Description: DUF2971 Location: 35245-35500 bp Feature: domain Description: DUF2971 Location: 3 5245-3 5500 bp Feature: gene Location: 35817-36179 bp Ori: RGZ35135.1 Feature: domain Description: COG3943 Location: 35856-36108 bp Feature: domain Description: COG3 943 Location: 3 5856-3 6108 bp Feature: gene Location: 36394-38201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36658-37402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6658-3 7402 bp Feature: gene Location: 38748-39917 bp Ori: RGZ35136.1 Feature: domain Description: Arm-DNA-bind_5 Location: 38778-39033 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3 8778-3 903 3 bp Feature: domain Description: Phage_int_SAM_5 Location: 39072-39393 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 9072-3 93 93 bp Feature: domain Description: INTN1_C_like Location: 39432-39900 bp Feature: domain Description: INTN1_C_like Location: 3 943 2-3 9900 bp Feature: gene Location: 40272-41354 bp Ori: RGZ35137.1 Feature: domain Description: APH Location: 40329-41052 bp Feature: domain Description: APH Location: 403 29-41052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), COG3943 (Uncharacterized conserved protein ), RVT-GII, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), APH (pfam01636)

Seq: QSEA01000093.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf93, whole genome shotgun sequence (541 bp)
Overview 1 RT 1: 1-490 bp Neighborhood of RT #1 [1, 541] RVT-GII Feature: gene Location: 1-541 bp Ori: RGZ29245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -4 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSEA01000017.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf17, whole genome shotgun sequence (80827 bp)
Overview 1 RT 1: 38851-42920 bp Neighborhood of RT #1 [38851, 42997] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 38851-39093 bp Feature: gene Location: 39296-39781 bp Feature: gene Location: 39778-41079 bp Ori: RGZ31873.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39991-40585 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39991-405 85 bp Feature: gene Location: 41455-41688 bp Feature: gene Location: 41786-42997 bp Ori: RGZ31875.1 Feature: domain Description: TipAS Location: 41810-42113 bp Feature: domain Description: TipAS Location: 41810-42113 bp Feature: domain Description: COG2369 Location: 42233-42419 bp Feature: domain Description: COG2369 Location: 42233-42419 bp Feature: domain Description: LPD3 Location: 42638-42920 bp Feature: domain Description: LPD3 Location: 42638-42920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: QSEA01000037.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf37, whole genome shotgun sequence (29110 bp)
Overview 1 RT 1: 13781-18713 bp Neighborhood of RT #1 [13781, 18976] YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 13781-14701 bp Feature: domain Description: YWFCY Location: 13787-13964 bp Feature: domain Description: YWFCY Location: 13787-1396 4 bp Feature: gene Location: 15070-15267 bp Feature: gene Location: 15342-16994 bp Ori: RGZ30306.1 Gene: ltrA Feature: domain Description: RVT_N Location: 15396-15639 bp Feature: domain Description: RVT_N Location: 15396 -156 39 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15684-16332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156 84-16 332 bp Feature: domain Description: GIIM Note: maturase Location: 16386-16617 bp Feature: domain Description: GIIM Note: maturase Location: 16 386 -16 6 17 bp Feature: gene Location: 16999-18225 bp Ori: RGZ30307.1 Feature: domain Description: TraG-D_C Location: 17581-17914 bp Feature: domain Description: TraG-D_C Location: 17581-17914 bp Feature: gene Location: 18443-18976 bp Ori: RGZ30308.1 Feature: domain Description: DUF4326 Location: 18458-18713 bp Feature: domain Description: DUF4326 Location: 18458-18713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QSEA01000032.1 Bacteroides stercoris strain AM51-2BH AM51-2BH.Scaf32, whole genome shotgun sequence (35136 bp)
Overview 1 RT 1: 29449-34781 bp Neighborhood of RT #1 [29449, 34781] DUF3875 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 29449-29619 bp Ori: RGZ30577.1 Feature: domain Description: DUF3875 Location: 29467-29614 bp Feature: domain Description: DUF387 5 Location: 29467 -29614 bp Feature: gene Location: 29629-31473 bp Ori: RGZ30578.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 29632-31471 bp Feature: domain Description: Bac_Flav_CT_G Location: 29632-3147 1 bp Feature: gene Location: 32104-33750 bp Ori: RGZ30579.1 Gene: ltrA Feature: domain Description: RVT_N Location: 32158-32401 bp Feature: domain Description: RVT_N Location: 32158-32401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32446-33091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32446-33091 bp Feature: domain Description: GIIM Note: maturase Location: 33145-33376 bp Feature: domain Description: GIIM Note: maturase Location: 33145-3337 6 bp Feature: gene Location: 33759-34367 bp Ori: RGZ30580.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 33876-34335 bp Feature: domain Description: Bac_Flav_CT_G Location: 3387 6-34335 bp Feature: gene Location: 34506-34781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)