myRT

myRT report for GCA_003463885.1_ASM346388v1

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Seq: QSEC01000042.1 Bacteroides vulgatus strain AM51-1 AM51-1.Scaf42, whole genome shotgun sequence (37880 bp)
Overview 1 RT 1: 11148-15119 bp Neighborhood of RT #1 [11148, 15163] RVT-GII DUF2582 DUF2582 Feature: gene Location: 11148-12917 bp Feature: gene Location: 13424-13654 bp Feature: gene Location: 13667-13915 bp Ori: RGZ42305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13757-13910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3757-1 391 0 bp Feature: gene Location: 14697-14920 bp Feature: domain Description: DUF2582 Location: 14700-14880 bp Feature: domain Description: DUF2582 Location: 1 4700-1 4880 bp Feature: gene Location: 14939-15163 bp Ori: RGZ42306.1 Feature: domain Description: DUF2582 Location: 14942-15119 bp Feature: domain Description: DUF2582 Location: 1 4942-1 51 1 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF2582 (pfam10771)

Seq: QSEC01000103.1 Bacteroides vulgatus strain AM51-1 AM51-1.Scaf103, whole genome shotgun sequence (2495 bp)
Overview 1 RT 1: 1-1895 bp Neighborhood of RT #1 [1, 1921] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-123 bp Feature: gene Location: 116-1921 bp Ori: RGZ37181.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-12 02 bp Feature: domain Description: Intron_maturas2 Location: 1361-1730 bp Feature: domain Description: Intron_maturas2 Location: 1361-1730 bp Feature: domain Description: HNHc Note: nucleases Location: 1754-1895 bp Feature: domain Description: HNHc Note: nucleases Location: 1754-1895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSEC01000067.1 Bacteroides vulgatus strain AM51-1 AM51-1.Scaf67, whole genome shotgun sequence (17474 bp)
Overview 1 RT 1: 6656-14756 bp Neighborhood of RT #1 [6656, 14756] HTH_26 RVT-AbiP2 rpsA S1 rpsA Feature: gene Location: 6656-7081 bp Feature: gene Location: 7289-7519 bp Ori: RGZ39196.1 Feature: domain Description: HTH_26 Location: 7310-7490 bp Feature: domain Description: HTH_26 Location: 73 10-7490 bp Feature: gene Location: 7535-9151 bp Ori: RGZ39197.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 7970-8441 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 7970-8441 bp Feature: gene Location: 9164-10390 bp Ori: RGZ39198.1 Feature: domain Description: rpsA Location: 9197-9452 bp Feature: domain Description: rpsA Location: 9197-9452 bp Feature: domain Description: S1 Location: 9464-9599 bp Feature: domain Description: S1 Location: 9464-9599 bp Feature: domain Description: rpsA Location: 9671-10229 bp Feature: domain Description: rpsA Location: 9671-10229 bp Feature: gene Location: 10371-14756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_26 (pfam13443), RVT-AbiP2, rpsA (TIGR00717), S1 (smart00316)

Seq: QSEC01000005.1 Bacteroides vulgatus strain AM51-1 AM51-1.Scaf5, whole genome shotgun sequence (161619 bp)
Overview 1 RT 1: 60327-69455 bp Neighborhood of RT #1 [60327, 69744] Mrr_cat ATPase_2 RVT-UG3 RVT-UG8 Glyco_hydro_127 Feature: gene Location: 60327-61154 bp Ori: RGZ46905.1 Feature: domain Description: Mrr_cat Location: 60390-60669 bp Feature: domain Description: Mrr_cat Location: 60390-60669 bp Feature: gene Location: 61250-62374 bp Ori: RGZ46906.1 Feature: domain Description: ATPase_2 Location: 61304-62033 bp Feature: domain Description: ATPase_2 Location: 61304 -62033 bp Feature: gene Location: 62753-64216 bp Ori: RGZ46907.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 63209-63740 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 63209-6374 0 bp Feature: gene Location: 64207-66390 bp Ori: RGZ46908.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 64828-65281 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 64 828-65281 bp Feature: gene Location: 67307-67696 bp Feature: gene Location: 67823-69744 bp Feature: domain Description: Glyco_hydro_127 Location: 67970-69455 bp Feature: domain Description: Glyco_hydro_127 Location: 67970-694 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), ATPase_2 (pfam01637), RVT-UG3, RVT-UG8, Glyco_hydro_127 (pfam07944)

Seq: QSEC01000023.1 Bacteroides vulgatus strain AM51-1 AM51-1.Scaf23, whole genome shotgun sequence (79360 bp)
Overview 1 RT 1: 32250-39215 bp Neighborhood of RT #1 [32250, 39215] UvrD UvrD UvrD RVT-Retrons Feature: gene Location: 32250-33878 bp Ori: RGZ43598.1 Feature: domain Description: UvrD Location: 32277-32394 bp Feature: domain Description: UvrD Location: 32277-32394 bp Feature: domain Description: UvrD Location: 33069-33564 bp Feature: domain Description: UvrD Location: 33069-335 64 bp Feature: domain Description: UvrD Location: 33636-33789 bp Feature: domain Description: UvrD Location: 33636-33789 bp Feature: gene Location: 33888-35657 bp Feature: gene Location: 35986-37446 bp Ori: RGZ43600.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36187-36814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36187-36814 bp Feature: gene Location: 37448-38365 bp Feature: gene Location: 38673-39215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons

Seq: QSEC01000025.1 Bacteroides vulgatus strain AM51-1 AM51-1.Scaf25, whole genome shotgun sequence (76568 bp)
Overview 1 RT 1: 33691-37487 bp Neighborhood of RT #1 [33691, 37487] RVT-DGRs Feature: gene Location: 33691-34086 bp Feature: gene Location: 34108-34455 bp Feature: gene Location: 34836-35651 bp Ori: RGZ43388.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35169-35493 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3516 9-35493 bp Feature: gene Location: 35713-35913 bp Feature: gene Location: 36168-37487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs