myRT

myRT report for GCA_003463955.1_ASM346395v1

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Seq: QSEG01000042.1 Bacteroides ovatus strain AM50-10BH AM50-10BH.Scaf42, whole genome shotgun sequence (58026 bp)
Overview 1 RT 1: 42346-49657 bp Neighborhood of RT #1 [42346, 49656] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT-GII Intron_maturas2 Bac_Flav_CT_G Feature: gene Location: 42346-42519 bp Ori: RGZ54552.1 Feature: domain Description: Bac_Flav_CT_G Location: 42349-42505 bp Feature: domain Description: Bac_Flav_CT_G Location: 42349-42505 bp Feature: gene Location: 42526-42804 bp Ori: RGZ54553.1 Feature: domain Description: Bac_Flav_CT_G Location: 42544-42802 bp Feature: domain Description: Bac_Flav_CT_G Location: 42544-42802 bp Feature: gene Location: 42882-44693 bp Ori: RGZ54554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43146-43968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 46-43968 bp Feature: domain Description: Intron_maturas2 Location: 44043-44358 bp Feature: domain Description: Intron_maturas2 Location: 44043-44358 bp Feature: domain Description: HNHc Note: nucleases Location: 44514-44664 bp Feature: domain Description: HNHc Note: nucleases Location: 4451 4-44664 bp Feature: gene Location: 45240-45794 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 45243-45780 bp Feature: domain Description: Bac_Flav_CT_G Location: 45243-45780 bp Feature: gene Location: 45910-47717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46174-46996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461 74-46996 bp Feature: domain Description: Intron_maturas2 Location: 47065-47377 bp Feature: domain Description: Intron_maturas2 Location: 47065-47377 bp Feature: gene Location: 47725-48225 bp Feature: gene Location: 48307-49656 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 48310-49657 bp Feature: domain Description: Bac_Flav_CT_G Location: 4831 0-49657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSEG01000016.1 Bacteroides ovatus strain AM50-10BH AM50-10BH.Scaf16, whole genome shotgun sequence (133455 bp)
Overview 1 RT 1: 52535-64975 bp Neighborhood of RT #1 [52535, 65091] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 52535-53008 bp Feature: gene Location: 53719-55881 bp Feature: gene Location: 56104-57234 bp Ori: RGZ59747.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56425-56968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5642 5-56968 bp Feature: gene Location: 57236-63192 bp Feature: domain Description: DUF4011 Location: 58466-58979 bp Feature: domain Description: DUF4011 Location: 58466-58979 bp Feature: domain Description: DEXXQc_SF1 Location: 59318-59936 bp Feature: domain Description: DEXXQc_SF1 Location: 59318-59936 bp Feature: domain Description: DEXXQc_SF1 Location: 60746-61505 bp Feature: domain Description: DEXXQc_SF1 Location: 60746-61505 bp Feature: domain Description: TIGR00376 Location: 61634-62024 bp Feature: domain Description: TIGR00376 Location: 61634-62 02 4 bp Feature: domain Description: MTES_1575 Location: 62177-62462 bp Feature: domain Description: MTES_1575 Location: 62 177-62 462 bp Feature: domain Description: DUF3320 Location: 62702-62822 bp Feature: domain Description: DUF332 0 Location: 62 702 -62 82 2 bp Feature: gene Location: 63289-65091 bp Ori: RGZ59748.1 Feature: domain Description: rpsA Location: 63358-64975 bp Feature: domain Description: rpsA Location: 63358-64975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSEG01000013.1 Bacteroides ovatus strain AM50-10BH AM50-10BH.Scaf13, whole genome shotgun sequence (153956 bp)
Overview 1 RT 1: 24717-28955 bp Neighborhood of RT #1 [24717, 28990] Mfa_like_1 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 24717-25996 bp Feature: domain Description: Mfa_like_1 Location: 24789-25200 bp Feature: domain Description: Mfa_like_1 Location: 24789-25200 bp Feature: gene Location: 26333-26653 bp Ori: RGZ60461.1 Feature: domain Description: HTH_28 Location: 26387-26528 bp Feature: domain Description: HTH_28 Location: 263 87-26528 bp Feature: gene Location: 26744-26941 bp Ori: RGZ60462.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-26939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-2693 9 bp Feature: gene Location: 26919-27296 bp Ori: RGZ60463.1 Feature: domain Description: RVT_N Location: 26922-27147 bp Feature: domain Description: RVT_N Location: 26922-27147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27201-27270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27201-27270 bp Feature: gene Location: 27310-27546 bp Feature: gene Location: 28241-28990 bp Ori: RGZ60465.1 Feature: domain Description: GDPD_like_2 Location: 28298-28955 bp Feature: domain Description: GDPD_like_2 Location: 28298-28955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)