myRT

myRT report for GCA_003463985.1_ASM346398v1

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Seq: QSEI01000015.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf15, whole genome shotgun sequence (95995 bp)
Overview 1 RT 1: 82206-88417 bp Neighborhood of RT #1 [82206, 88947] RVT-GII GIIM YwqK YwqK MORN_2 TPR_2 TPR_2 TPR_2 Feature: gene Location: 82206-82406 bp Feature: gene Location: 82500-83249 bp Feature: gene Location: 83290-84606 bp Ori: RGZ55862.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83485-84100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83485-841 00 bp Feature: domain Description: GIIM Note: maturase Location: 84160-84355 bp Feature: domain Description: GIIM Note: maturase Location: 841 60-84355 bp Feature: gene Location: 85291-86388 bp Ori: RGZ55863.1 Feature: domain Description: YwqK Location: 85498-85870 bp Feature: domain Description: YwqK Location: 85498-85870 bp Feature: domain Description: YwqK Location: 85885-86191 bp Feature: domain Description: YwqK Location: 85885-861 91 bp Feature: domain Description: MORN_2 Location: 86329-86377 bp Feature: domain Description: MORN_2 Location: 86329-86377 bp Feature: gene Location: 86434-88947 bp Ori: RGZ55880.1 Feature: domain Description: TPR_2 Location: 86659-86752 bp Feature: domain Description: TPR_2 Location: 86659-86752 bp Feature: domain Description: TPR_2 Location: 88216-88315 bp Feature: domain Description: TPR_2 Location: 8821 6-8831 5 bp Feature: domain Description: TPR_2 Location: 88324-88417 bp Feature: domain Description: TPR_2 Location: 88324-8841 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YwqK (COG2849), MORN_2 (pfam07661), TPR_2 (pfam07719)

Seq: QSEI01000010.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf10, whole genome shotgun sequence (110087 bp)
Overview 1 RT 1: 103604-110087 bp Neighborhood of RT #1 [103604, 110087] HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 Feature: gene Location: 103604-103882 bp Ori: RGZ56933.1 Feature: domain Description: HTH_17 Location: 103724-103871 bp Feature: domain Description: HTH_17 Location: 10372 4-103871 bp Feature: gene Location: 104143-105348 bp Ori: RGZ56934.1 Feature: domain Description: Arm-DNA-bind_5 Location: 104176-104392 bp Feature: domain Description: Arm-DNA-bind_5 Location: 104176-104392 bp Feature: domain Description: Phage_int_SAM_5 Location: 104530-104764 bp Feature: domain Description: Phage_int_SAM_5 Location: 104530-104764 bp Feature: domain Description: INTN1_C_like Location: 104830-105334 bp Feature: domain Description: INTN1_C_like Location: 104830-105334 bp Feature: gene Location: 105786-109223 bp Ori: RGZ56935.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 106296-106761 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 1062 96-106761 bp Feature: gene Location: 109236-109964 bp Feature: gene Location: 110006-110087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24

Seq: QSEI01000029.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf29, whole genome shotgun sequence (51354 bp)
Overview 1 RT 1: 2601-8549 bp Neighborhood of RT #1 [2601, 8549] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 2601-2924 bp Ori: RGZ53872.1 Feature: domain Description: DUF4133 Location: 2616-2886 bp Feature: domain Description: DUF413 3 Location: 2616-2886 bp Feature: gene Location: 2921-5215 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 2924-3989 bp Feature: domain Description: Bac_Flav_CT_G Location: 2924-3 989 bp Feature: gene Location: 5561-7375 bp Ori: RGZ53873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5825-6647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5825-6647 bp Feature: domain Description: Intron_maturas2 Location: 6722-7040 bp Feature: domain Description: Intron_maturas2 Location: 6722-7040 bp Feature: domain Description: HNHc Note: nucleases Location: 7196-7346 bp Feature: domain Description: HNHc Note: nucleases Location: 7196-73 46 bp Feature: gene Location: 7483-7929 bp Feature: domain Description: Bac_Flav_CT_G Location: 7486-7894 bp Feature: domain Description: Bac_Flav_CT_G Location: 7486-7894 bp Feature: gene Location: 7926-8549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSEI01000009.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf9, whole genome shotgun sequence (111656 bp)
Overview 1 RT 1: 52104-56250 bp Neighborhood of RT #1 [52104, 56250] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 52104-53315 bp Ori: RGZ57113.1 Feature: domain Description: TipAS Location: 52128-52431 bp Feature: domain Description: TipAS Location: 52128-524 31 bp Feature: domain Description: COG2369 Location: 52551-52737 bp Feature: domain Description: COG2369 Location: 52551-52737 bp Feature: domain Description: LPD3 Location: 52956-53238 bp Feature: domain Description: LPD3 Location: 52956-53238 bp Feature: gene Location: 53413-53646 bp Feature: gene Location: 54022-55322 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54235-54673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54 235-54 673 bp Feature: gene Location: 55319-55804 bp Feature: gene Location: 56008-56250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: QSEI01000003.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf3, whole genome shotgun sequence (167232 bp)
Overview 1 RT 1: 1751-5473 bp Neighborhood of RT #1 [1751, 5473] RrnaAD RVT-GII GIIM Feature: gene Location: 1751-2551 bp Ori: RGZ58583.1 Gene: erm(F) Feature: domain Description: RrnaAD Location: 1778-2516 bp Feature: domain Description: RrnaAD Location: 1778-25 16 bp Feature: gene Location: 2570-2767 bp Feature: gene Location: 3297-4592 bp Ori: RGZ58585.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492-4107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492-4107 bp Feature: domain Description: GIIM Note: maturase Location: 4179-4392 bp Feature: domain Description: GIIM Note: maturase Location: 4179-4392 bp Feature: gene Location: 4929-5132 bp Feature: gene Location: 5165-5473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RrnaAD (pfam00398), RVT-GII, GIIM (pfam08388)

Seq: QSEI01000032.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf32, whole genome shotgun sequence (50289 bp)
Overview 1 RT 1: 4906-9860 bp Neighborhood of RT #1 [4906, 9860] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 4906-6194 bp Feature: gene Location: 6412-7332 bp Ori: RGZ53565.1 Feature: domain Description: Toprim_2 Location: 6946-7225 bp Feature: domain Description: Toprim_2 Location: 6 946 -7225 bp Feature: gene Location: 7322-9130 bp Ori: RGZ53566.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7586-8408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7586 -8408 bp Feature: domain Description: Intron_maturas2 Location: 8477-8786 bp Feature: domain Description: Intron_maturas2 Location: 8477-8786 bp Feature: gene Location: 9165-9588 bp Feature: gene Location: 9693-9860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSEI01000020.1 Bacteroides plebeius strain AM49-7BH AM49-7BH.Scaf20, whole genome shotgun sequence (68306 bp)
Overview 1 RT 1: 32527-39366 bp Neighborhood of RT #1 [32527, 42077] RVT-DGRs CotH Feature: gene Location: 32527-32832 bp Feature: gene Location: 32997-33476 bp Feature: gene Location: 33478-34785 bp Ori: RGZ55107.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33691-34288 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33691-34288 bp Feature: gene Location: 34794-35087 bp Feature: gene Location: 35172-42077 bp Ori: RGZ55075.1 Feature: domain Description: CotH Location: 38877-39366 bp Feature: domain Description: CotH Location: 3887 7 -39366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, CotH (pfam08757)