myRT

myRT report for GCA_003464115.1_ASM346411v1

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Seq: QSDZ01000053.1 [Ruminococcus] gnavus strain AM51-4BH AM51-4BH.Scaf53, whole genome shotgun sequence (11968 bp)
Overview 1 RT 1: 1737-6048 bp Neighborhood of RT #1 [1737, 6068] Methyltransf_11 RVT-GII PRK12735 Feature: gene Location: 1737-2348 bp Feature: domain Description: Methyltransf_11 Location: 1875-2172 bp Feature: domain Description: Methyltransf_1 1 Location: 1 875-21 72 bp Feature: gene Location: 2382-2897 bp Feature: gene Location: 3294-4589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3549-4239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3549-4239 bp Feature: gene Location: 5109-5636 bp Feature: gene Location: 5691-6068 bp Feature: domain Description: PRK12735 Location: 5769-6048 bp Feature: domain Description: PRK1 2735 Location: 5769-6048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_11 (pfam08241), RVT-GII, PRK12735 (elongation factor Tu; Reviewed)

Seq: QSDZ01000009.1 [Ruminococcus] gnavus strain AM51-4BH AM51-4BH.Scaf9, whole genome shotgun sequence (135377 bp)
Overview 1 RT 1: 124494-129882 bp Neighborhood of RT #1 [124494, 129920] BaeS trans_reg_C RVT-GII VirD4 HipB DUF3955 Feature: gene Location: 124494-125651 bp Feature: domain Description: BaeS Location: 124728-125637 bp Feature: domain Description: BaeS Location: 12 472 8-12 5637 bp Feature: gene Location: 125648-125935 bp Feature: domain Description: trans_reg_C Location: 125654-125915 bp Feature: domain Description: trans_reg_C Location: 12 5654-12 5915 bp Feature: gene Location: 126004-127911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126334-127078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 6334-12 7078 bp Feature: gene Location: 128073-129113 bp Feature: domain Description: VirD4 Location: 128193-128982 bp Feature: domain Description: VirD4 Location: 12 8193-12 8982 bp Feature: gene Location: 129438-129920 bp Feature: domain Description: HipB Location: 129447-129708 bp Feature: domain Description: HipB Location: 12 9447-12 9708 bp Feature: domain Description: DUF3955 Location: 129717-129882 bp Feature: domain Description: DUF3955 Location: 12 9717-12 9882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), trans_reg_C (cd00383), RVT-GII, VirD4 (COG3505), HipB (COG1396), DUF3955 (pfam13127)

Seq: QSDZ01000004.1 [Ruminococcus] gnavus strain AM51-4BH AM51-4BH.Scaf4, whole genome shotgun sequence (189355 bp)
Overview 1 RT 1: 185234-188936 bp Neighborhood of RT #1 [185234, 189286] PLDc_ymdC_like_1 ApbE RVT-GII Feature: gene Location: 185234-186620 bp Feature: domain Description: PLDc_ymdC_like_1 Location: 185399-185876 bp Feature: domain Description: PLDc_ymdC_like_1 Location: 1853 99-185876 bp Feature: gene Location: 186797-187777 bp Feature: domain Description: ApbE Location: 186845-187763 bp Feature: domain Description: ApbE Location: 186845-187763 bp Feature: gene Location: 187991-189286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188246-188936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188246-18893 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_ymdC_like_1 (cd09111), ApbE (pfam02424), RVT-GII

Seq: QSDZ01000005.1 [Ruminococcus] gnavus strain AM51-4BH AM51-4BH.Scaf5, whole genome shotgun sequence (183161 bp)
Overview 1 RT 1: 171543-179170 bp Neighborhood of RT #1 [171543, 179244] AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 171543-173738 bp Feature: gene Location: 173738-174760 bp Feature: domain Description: AAA_10 Location: 173819-174722 bp Feature: domain Description: AAA_10 Location: 173819-174 722 bp Feature: gene Location: 174795-176621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175095-175794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175095-175794 bp Feature: gene Location: 177366-178868 bp Feature: domain Description: AAA_10 Location: 178695-178866 bp Feature: domain Description: AAA_10 Location: 178695-178866 bp Feature: gene Location: 178855-179244 bp Feature: domain Description: TcpE Location: 178873-179170 bp Feature: domain Description: TcpE Location: 178873-179170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)