myRT

myRT report for GCA_003464385.1_ASM346438v1

Download annotations/find similar RTs

Seq: QRYS01000019.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf19, whole genome shotgun sequence (57124 bp)
Overview 1 RT 1: 1-6807 bp Neighborhood of RT #1 [1, 7190] RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 1-194 bp Feature: gene Location: 178-1845 bp Ori: RGU96584.1 Gene: ltrA Feature: domain Description: RVT_N Location: 232-475 bp Feature: domain Description: RVT_N Location: 232-475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-1168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-1 1 68 bp Feature: domain Description: GIIM Note: maturase Location: 1222-1453 bp Feature: domain Description: GIIM Note: maturase Location: 1 222-1 453 bp Feature: gene Location: 1811-2014 bp Feature: gene Location: 2502-7190 bp Ori: RGU96586.1 Feature: domain Description: N6_Mtase Location: 2814-3417 bp Feature: domain Description: N6_Mtase Location: 281 4-341 7 bp Feature: domain Description: COG4646 Location: 4746-6807 bp Feature: domain Description: COG4646 Location: 4746-6807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QRYS01000002.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf2, whole genome shotgun sequence (940358 bp)
Overview 1 RT 1: 341942-347413 bp Neighborhood of RT #1 [341942, 347553] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 341942-342151 bp Feature: gene Location: 343622-343912 bp Ori: RGV01088.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 343649-343859 bp Feature: domain Description: Cas2 _I_II_III Location: 343649-343859 bp Feature: gene Location: 343906-346176 bp Ori: RGV01089.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 344113-344719 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 344113-344719 bp Feature: domain Description: Cas1_I-II-III Location: 345178-346135 bp Feature: domain Description: Cas1_I-II-III Location: 345178-346135 bp Feature: gene Location: 346196-347140 bp Ori: RGV01595.1 Gene: cmr6 Feature: domain Description: Cmr6_III-B Location: 346352-347129 bp Feature: domain Description: Cmr6_III-B Location: 346352 -34712 9 bp Feature: gene Location: 347143-347553 bp Ori: RGV01090.1 Feature: domain Description: Cas_Cmr5 Location: 347191-347413 bp Feature: domain Description: Cas_Cmr5 Location: 347191-347413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: QRYS01000017.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf17, whole genome shotgun sequence (59680 bp)
Overview 1 RT 1: 45793-49825 bp Neighborhood of RT #1 [45793, 49845] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 45793-46368 bp Ori: RGU96816.1 Feature: domain Description: TraO Location: 45868-46363 bp Feature: domain Description: TraO Location: 45868-463 63 bp Feature: gene Location: 46371-47096 bp Ori: RGU96817.1 Gene: traN Feature: domain Description: Bac_Flav_CT_N Location: 46515-47076 bp Feature: domain Description: Bac_Flav_CT_N Location: 46515-47076 bp Feature: gene Location: 47068-48879 bp Ori: RGU96818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47332-48154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473 3 2-48154 bp Feature: domain Description: Intron_maturas2 Location: 48223-48532 bp Feature: domain Description: Intron_maturas2 Location: 48223 -4853 2 bp Feature: gene Location: 48914-49401 bp Feature: gene Location: 49420-49845 bp Ori: RGU96819.1 Feature: domain Description: Bac_Flav_CT_N Location: 49423-49825 bp Feature: domain Description: Bac_Flav_CT_N Location: 49423 -49825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRYS01000030.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf30, whole genome shotgun sequence (5074 bp)
Overview 1 RT 1: 80-4347 bp Neighborhood of RT #1 [80, 4347] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 80-991 bp Ori: RGU95362.1 Feature: domain Description: Toprim_2 Location: 614-902 bp Feature: domain Description: Toprim_2 Location: 614 -902 bp Feature: gene Location: 981-2789 bp Ori: RGU95363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245-2067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 5-2067 bp Feature: domain Description: Intron_maturas2 Location: 2136-2445 bp Feature: domain Description: Intron_maturas2 Location: 2136-24 4 5 bp Feature: gene Location: 3353-3520 bp Feature: gene Location: 3800-4347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRYS01000006.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf6, whole genome shotgun sequence (225852 bp)
Overview 1 RT 1: 97091-106055 bp Neighborhood of RT #1 [97091, 106057] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 97091-98005 bp Ori: RGU98783.1 Feature: domain Description: RNase_Z Location: 97106-97997 bp Feature: domain Description: RNase_Z Location: 97106-97997 bp Feature: gene Location: 98155-99948 bp Ori: RGU98784.1 Feature: domain Description: rpsA Location: 98233-99841 bp Feature: domain Description: rpsA Location: 98233-99841 bp Feature: gene Location: 100090-101202 bp Ori: RGU98785.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100405-100954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100405 -10095 4 bp Feature: gene Location: 101409-103628 bp Feature: gene Location: 103868-106057 bp Ori: RGU98787.1 Feature: domain Description: GlnA3 Location: 103943-106055 bp Feature: domain Description: GlnA3 Location: 103943-10605 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)