myRT

myRT report for GCA_003464405.1_ASM346440v1

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Seq: QRYT01000147.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf147, whole genome shotgun sequence (2853 bp)
Overview 1 RT 1: 166-2853 bp Neighborhood of RT #1 [166, 2853] RVT-GII Intron_maturas2 Feature: gene Location: 166-333 bp Feature: gene Location: 897-2705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 61 -1 983 bp Feature: domain Description: Intron_maturas2 Location: 2052-2361 bp Feature: domain Description: Intron_maturas2 Location: 2052-2361 bp Feature: gene Location: 2695-2853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRYT01000001.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf1, whole genome shotgun sequence (201646 bp)
Overview 1 RT 1: 110033-113233 bp Neighborhood of RT #1 [110033, 113233] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 110033-110377 bp Feature: domain Description: Gp49 Location: 110087-110345 bp Feature: domain Description: Gp49 Location: 110087-110345 bp Feature: gene Location: 110382-110693 bp Feature: domain Description: HTH_XRE Location: 110496-110649 bp Feature: domain Description: HTH_XRE Location: 110496-110649 bp Feature: gene Location: 110940-112430 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111333-111930 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111333-111930 bp Feature: gene Location: 112498-113004 bp Feature: gene Location: 112988-113233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: QRYT01000078.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf78, whole genome shotgun sequence (20296 bp)
Overview 1 RT 1: 7433-16896 bp Neighborhood of RT #1 [7433, 17093] N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C YhcG Feature: gene Location: 7433-10885 bp Feature: domain Description: N6_Mtase Location: 7724-8363 bp Feature: domain Description: N6_Mtase Location: 7724-83 63 bp Feature: domain Description: COG4646 Location: 9950-10883 bp Feature: domain Description: COG4646 Location: 9950-10883 bp Feature: gene Location: 10988-11443 bp Feature: gene Location: 11450-13252 bp Feature: domain Description: matK Location: 11519-11606 bp Feature: domain Description: matK Location: 11519-11606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11714-1253 6 bp Feature: domain Description: Intron_maturas2 Location: 12686-12920 bp Feature: domain Description: Intron_maturas2 Location: 12686-12920 bp Feature: gene Location: 13368-16016 bp Feature: domain Description: COG4646 Location: 13371-14490 bp Feature: domain Description: COG4646 Location: 13 3 71-14490 bp Feature: domain Description: Helicase_C Location: 14688-14907 bp Feature: domain Description: Helicase_C Location: 14688-14907 bp Feature: gene Location: 16080-17093 bp Feature: domain Description: YhcG Location: 16413-16896 bp Feature: domain Description: YhcG Location: 16413 -16896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), YhcG (COG4804)

Seq: QRYT01000057.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf57, whole genome shotgun sequence (31037 bp)
Overview 1 RT 1: 10260-18592 bp Neighborhood of RT #1 [10260, 18597] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 10260-10574 bp Feature: domain Description: DUF3876 Location: 10314-10563 bp Feature: domain Description: DUF3876 Location: 10314 -10563 bp Feature: gene Location: 10589-12295 bp Feature: domain Description: Bac_Flav_CT_G Location: 10721-12287 bp Feature: domain Description: Bac_Flav_CT_G Location: 10721-12287 bp Feature: gene Location: 12280-13989 bp Feature: RT Description: RVT_N Location: 12382-12625 bp Feature: RT Description: RVT_N Location: 12382-12625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12670-13318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12670-13318 bp Feature: domain Description: GIIM Note: maturase Location: 13372-13603 bp Feature: domain Description: GIIM Note: maturase Location: 13372-13603 bp Feature: gene Location: 14543-15463 bp Feature: domain Description: Bac_Flav_CT_G Location: 14546-15464 bp Feature: domain Description: Bac_Flav_CT_G Location: 14 54 6-154 64 bp Feature: gene Location: 15460-15783 bp Feature: domain Description: DUF4133 Location: 15514-15742 bp Feature: domain Description: DUF4 133 Location: 15514 -1574 2 bp Feature: gene Location: 15843-17660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16107-16929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16107-16929 bp Feature: domain Description: Intron_maturas2 Location: 17004-17331 bp Feature: domain Description: Intron_maturas2 Location: 17004 -17331 bp Feature: domain Description: HNHc Note: nucleases Location: 17484-17634 bp Feature: domain Description: HNHc Note: nucleases Location: 174 84 -17634 bp Feature: gene Location: 18221-18283 bp Feature: gene Location: 18295-18597 bp Feature: domain Description: DUF4134 Location: 18325-18592 bp Feature: domain Description: DUF4 134 Location: 18325-18592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: QRYT01000006.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf6, whole genome shotgun sequence (152154 bp)
Overview 1 RT 1: 55971-59767 bp Neighborhood of RT #1 [55971, 59767] RVT-DGRs Feature: gene Location: 55971-57290 bp Feature: gene Location: 57545-57745 bp Feature: gene Location: 57807-58622 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58140-58467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 8140-5 8467 bp Feature: gene Location: 59003-59350 bp Feature: gene Location: 59372-59767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRYT01000058.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf58, whole genome shotgun sequence (30415 bp)
Overview 1 RT 1: 839-4568 bp Neighborhood of RT #1 [839, 4568] RVT-DGRs Feature: gene Location: 839-1111 bp Feature: gene Location: 1086-2420 bp Feature: gene Location: 2780-3790 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2990-3581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2990-3581 bp Feature: gene Location: 3768-4151 bp Feature: gene Location: 4170-4568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRYT01000027.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf27, whole genome shotgun sequence (67847 bp)
Overview 1 RT 1: 18096-29483 bp Neighborhood of RT #1 [18096, 29483] XerC RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 18096-19262 bp Feature: domain Description: XerC Location: 18396-19206 bp Feature: domain Description: XerC Location: 18396-19206 bp Feature: gene Location: 19303-19797 bp Feature: gene Location: 19799-21094 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20015-20606 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20015-20606 bp Feature: gene Location: 21528-28316 bp Feature: domain Description: Laminin_G_3 Location: 23964-24345 bp Feature: domain Description: Laminin_G_3 Location: 23964-24345 bp Feature: domain Description: CotH Location: 24609-25653 bp Feature: domain Description: CotH Location: 24609-25653 bp Feature: domain Description: LRR_AMN1 Location: 26070-26532 bp Feature: domain Description: LRR_AMN1 Location: 2607 0-26532 bp Feature: gene Location: 28326-29483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: QRYT01000032.1 Bacteroides vulgatus strain AF14-8 AF14-8.Scaf32, whole genome shotgun sequence (52664 bp)
Overview 1 RT 1: 1-4596 bp 2 RT 2: 19458-25369 bp 3 RT 3: 29288-38239 bp Neighborhood of RT #1 [1, 4596] DUF4120 RVT-GII GIIM Neighborhood of RT #2 [19458, 25407] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #3 [29288, 38239] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 1-867 bp Feature: gene Location: 901-1194 bp Feature: domain Description: DUF4120 Location: 907-1192 bp Feature: domain Description: DUF4120 Location: 907-1192 bp Feature: gene Location: 1667-3067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003-2618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2003-2618 bp Feature: domain Description: GIIM Note: maturase Location: 2672-2903 bp Feature: domain Description: GIIM Note: maturase Location: 2672-2903 bp Feature: gene Location: 3392-4330 bp Feature: gene Location: 4327-4596 bp Feature: gene Location: 19458-20081 bp Feature: gene Location: 20078-20524 bp Feature: domain Description: Bac_Flav_CT_G Location: 20081-20489 bp Feature: domain Description: Bac_Flav_CT_G Location: 2008 1-2048 9 bp Feature: gene Location: 20632-22443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20896-21718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208 96-21718 bp Feature: domain Description: Intron_maturas2 Location: 21790-22120 bp Feature: domain Description: Intron_maturas2 Location: 21790-22120 bp Feature: domain Description: HNHc Note: nucleases Location: 22264-22414 bp Feature: domain Description: HNHc Note: nucleases Location: 22264-22414 bp Feature: gene Location: 22927-25087 bp Feature: domain Description: Bac_Flav_CT_G Location: 22930-25012 bp Feature: domain Description: Bac_Flav_CT_G Location: 22930-25012 bp Feature: gene Location: 25084-25407 bp Feature: domain Description: DUF4133 Location: 25099-25369 bp Feature: domain Description: DUF4133 Location: 25099-25369 bp Feature: gene Location: 29288-30550 bp Feature: domain Description: Relaxase Location: 29414-29936 bp Feature: domain Description: Relaxase Location: 29414-29936 bp Feature: domain Description: Relaxase Location: 30101-30311 bp Feature: domain Description: Relaxase Location: 30101-30311 bp Feature: gene Location: 30613-31533 bp Feature: domain Description: YWFCY Location: 30619-30796 bp Feature: domain Description: YWFCY Location: 30619-30796 bp Feature: gene Location: 32173-33825 bp Feature: RT Description: RVT_N Location: 32227-32470 bp Feature: RT Description: RVT_N Location: 32227-32470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32515-33163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32515-33163 bp Feature: domain Description: GIIM Note: maturase Location: 33217-33448 bp Feature: domain Description: GIIM Note: maturase Location: 33217-33448 bp Feature: gene Location: 33830-34180 bp Feature: gene Location: 34576-34764 bp Feature: gene Location: 34718-36535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34985-35807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3498 5-358 07 bp Feature: domain Description: Intron_maturas2 Location: 35921-36185 bp Feature: domain Description: Intron_maturas2 Location: 35921-3618 5 bp Feature: domain Description: HNHc Note: nucleases Location: 36356-36506 bp Feature: domain Description: HNHc Note: nucleases Location: 36356-36506 bp Feature: gene Location: 36499-37530 bp Feature: domain Description: TraG-D_C Location: 36877-37210 bp Feature: domain Description: TraG-D_C Location: 368 77-37210 bp Feature: gene Location: 37826-38239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4120 (pfam13496), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655)
TraG-D_C (pfam12696)