myRT

myRT report for GCA_003464445.1_ASM346444v1

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Seq: QRYV01000039.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf39, whole genome shotgun sequence (61376 bp)
Overview 1 RT 1: 57463-60366 bp Neighborhood of RT #1 [57463, 60380] Translocase_SecB RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C PDDEXK_9 Feature: gene Location: 57463-57879 bp Ori: RGV12406.1 Feature: domain Description: Translocase_SecB Location: 57520-57844 bp Feature: domain Description: Translocase_SecB Location: 57520-57844 bp Feature: gene Location: 57908-58141 bp Feature: gene Location: 58465-58866 bp Ori: RGV12408.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58486-58786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58486-58786 bp Feature: gene Location: 58845-59225 bp Ori: RGV12409.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58854-59004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58854-59004 bp Feature: domain Description: GIIM Note: maturase Location: 59088-59208 bp Feature: domain Description: GIIM Note: maturase Location: 59088-59208 bp Feature: gene Location: 59321-59521 bp Ori: RGV12410.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 59333-59435 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 59333-59435 bp Feature: gene Location: 59844-60380 bp Feature: domain Description: PDDEXK_9 Location: 60231-60366 bp Feature: domain Description: PDDEXK_9 Location: 60231 -60366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), PDDEXK_9 (pfam08011)

Seq: QRYV01000021.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf21, whole genome shotgun sequence (85015 bp)
Overview 1 RT 1: 5985-9411 bp Neighborhood of RT #1 [5985, 9425] TraO DUF3872 RVT-AbiP2 DUF3873 Feature: gene Location: 5985-6569 bp Ori: RGV14817.1 Feature: domain Description: TraO Location: 6066-6564 bp Feature: domain Description: TraO Location: 6066-6564 bp Feature: gene Location: 6585-7025 bp Ori: RGV14818.1 Feature: domain Description: DUF3872 Location: 6615-7008 bp Feature: domain Description: DUF3872 Location: 6615-7008 bp Feature: gene Location: 7076-8581 bp Ori: RGV14895.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 7505-7961 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 7505-7961 bp Feature: gene Location: 8709-9191 bp Feature: gene Location: 9207-9425 bp Ori: RGV14820.1 Feature: domain Description: DUF3873 Location: 9216-9411 bp Feature: domain Description: DUF3873 Location: 92 16-9411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), DUF3872 (pfam12988), RVT-AbiP2, DUF3873 (pfam12989)

Seq: QRYV01000017.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf17, whole genome shotgun sequence (96175 bp)
Overview 1 RT 1: 27910-34551 bp Neighborhood of RT #1 [27910, 34607] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 27910-29613 bp Ori: RGV15360.1 Feature: domain Description: REC Location: 28729-28960 bp Feature: domain Description: REC Location: 28729-28960 bp Feature: gene Location: 29610-30254 bp Feature: gene Location: 30232-32451 bp Ori: RGV15362.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30433-31018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 043 3 -3 1018 bp Feature: gene Location: 32728-33693 bp Ori: RGV15422.1 Feature: domain Description: Phage_int_SAM_5 Location: 32761-33004 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 2761-3 3 004 bp Feature: domain Description: INTN1_C_like Location: 33088-33607 bp Feature: domain Description: INTN1_C_like Location: 3 3 088-3 3 607 bp Feature: gene Location: 34029-34607 bp Ori: RGV15363.1 Feature: domain Description: NGN_SP_UpxY Location: 34107-34389 bp Feature: domain Description: NGN_SP_UpxY Location: 3 4107-3 43 89 bp Feature: domain Description: KOW_NusG Location: 34440-34551 bp Feature: domain Description: KOW_NusG Location: 3 4440-3 4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: QRYV01000131.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf131, whole genome shotgun sequence (2495 bp)
Overview 1 RT 1: 1-1892 bp Neighborhood of RT #1 [1, 1921] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-101 bp Feature: gene Location: 110-1921 bp Ori: RGV02946.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374 -1196 bp Feature: domain Description: Intron_maturas2 Location: 1265-1592 bp Feature: domain Description: Intron_maturas2 Location: 1265-1592 bp Feature: domain Description: HNHc Note: nucleases Location: 1748-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 174 8-1892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRYV01000029.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf29, whole genome shotgun sequence (72921 bp)
Overview 1 RT 1: 6538-10777 bp Neighborhood of RT #1 [6538, 10812] Mfa_like_1 DUF1566 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 6538-7818 bp Ori: RGV14071.1 Feature: domain Description: Mfa_like_1 Location: 6610-7021 bp Feature: domain Description: Mfa_like_1 Location: 6610-7021 bp Feature: domain Description: DUF1566 Location: 7507-7807 bp Feature: domain Description: DUF15 66 Location: 75 07-7807 bp Feature: gene Location: 8155-8445 bp Ori: RGV14072.1 Feature: domain Description: HTH_28 Location: 8179-8323 bp Feature: domain Description: HTH_28 Location: 8179-8323 bp Feature: gene Location: 8566-8763 bp Ori: RGV14073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8569-8761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 69-8761 bp Feature: gene Location: 8741-9118 bp Ori: RGV14074.1 Feature: domain Description: RVT_N Location: 8744-8969 bp Feature: domain Description: RVT_N Location: 8744-8969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9023-9092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9023-9092 bp Feature: gene Location: 9132-9368 bp Feature: gene Location: 10063-10812 bp Ori: RGV14076.1 Feature: domain Description: GDPD_like_2 Location: 10120-10777 bp Feature: domain Description: GDPD_like_2 Location: 10120-10777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), DUF1566 (pfam07603), HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)

Seq: QRYV01000132.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf132, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 557-1847 bp Neighborhood of RT #1 [557, 2104] RVT_N RVT-GII GIIM Feature: gene Location: 557-2104 bp Ori: RGV02931.1 Gene: ltrA Feature: domain Description: RVT_N Location: 626-869 bp Feature: domain Description: RVT_N Location: 6 26 -86 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1559 bp Feature: domain Description: GIIM Note: maturase Location: 1613-1847 bp Feature: domain Description: GIIM Note: maturase Location: 16 13-1847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRYV01000129.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf129, whole genome shotgun sequence (2707 bp)
Overview 1 RT 1: 110-2693 bp Neighborhood of RT #1 [110, 2707] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 110-1921 bp Ori: RGV02983.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 4-1196 bp Feature: domain Description: Intron_maturas2 Location: 1271-1586 bp Feature: domain Description: Intron_maturas2 Location: 127 1-1586 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 17 42-1892 bp Feature: gene Location: 2468-2707 bp Ori: RGV02984.1 Feature: domain Description: Bac_Flav_CT_G Location: 2528-2693 bp Feature: domain Description: Bac_Flav_CT_G Location: 2528-2693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: QRYV01000015.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf15, whole genome shotgun sequence (98765 bp)
Overview 1 RT 1: 30498-38553 bp Neighborhood of RT #1 [30498, 38553] DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 RVT-GII GIIM TIGR00043 Feature: gene Location: 30498-33083 bp Ori: RGV15724.1 Feature: domain Description: DUF5118 Location: 30585-30732 bp Feature: domain Description: DUF5118 Location: 3058 5-30732 bp Feature: domain Description: DUF5117 Location: 30759-31344 bp Feature: domain Description: DUF5117 Location: 30759-31344 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 31371-31728 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 31371-31728 bp Feature: domain Description: DUF4953 Location: 31746-32655 bp Feature: domain Description: DUF4953 Location: 31746-32655 bp Feature: gene Location: 33092-35698 bp Ori: RGV15725.1 Feature: domain Description: DUF5118 Location: 33218-33362 bp Feature: domain Description: DUF5118 Location: 33218 -33362 bp Feature: domain Description: DUF5117 Location: 33395-33989 bp Feature: domain Description: DUF5117 Location: 33395-3398 9 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 34019-34376 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 34019-34376 bp Feature: domain Description: DUF4953 Location: 34388-35300 bp Feature: domain Description: DUF4953 Location: 3438 8 -35300 bp Feature: gene Location: 36220-37626 bp Ori: RGV15688.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36562-37180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36562-3718 0 bp Feature: domain Description: GIIM Note: maturase Location: 37237-37456 bp Feature: domain Description: GIIM Note: maturase Location: 37237-37456 bp Feature: gene Location: 37802-37978 bp Gene: ybeY Feature: domain Description: TIGR00043 Location: 37805-37967 bp Feature: domain Description: TIGR00043 Location: 378 05-37967 bp Feature: gene Location: 38063-38553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5118 (pfam17162), DUF5117 (pfam17148), ZnMc_MMP_like_2 (cd04276), DUF4953 (pfam16313), RVT-GII, GIIM (pfam08388), TIGR00043 (rRNA maturation RNase YbeY)

Seq: QRYV01000002.1 Bacteroides xylanisolvens strain AF14-7 AF14-7.Scaf2, whole genome shotgun sequence (192739 bp)
Overview 1 RT 1: 183515-192367 bp Neighborhood of RT #1 [183515, 192633] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 183515-185314 bp Ori: RGV19023.1 Feature: domain Description: rpsA Location: 183584-185183 bp Feature: domain Description: rpsA Location: 183584-185183 bp Feature: gene Location: 185411-191452 bp Ori: RGV19024.1 Feature: domain Description: DUF4011 Location: 186641-187154 bp Feature: domain Description: DUF4011 Location: 186641-187154 bp Feature: domain Description: DEXXQc_SF1 Location: 187493-187922 bp Feature: domain Description: DEXXQc_SF1 Location: 18749 3-1879 22 bp Feature: domain Description: DEXXQc_SF1 Location: 188930-189680 bp Feature: domain Description: DEXXQc_SF1 Location: 1889 30-189 680 bp Feature: domain Description: TIGR00376 Location: 189809-190199 bp Feature: domain Description: TIGR00376 Location: 189 809 -19 019 9 bp Feature: domain Description: MTES_1575 Location: 190352-190637 bp Feature: domain Description: MTES_1575 Location: 19 0352-19 0637 bp Feature: domain Description: DUF3320 Location: 190967-191102 bp Feature: domain Description: DUF3320 Location: 19 09 67-19 1102 bp Feature: gene Location: 191503-192633 bp Ori: RGV19025.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191824-192367 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19 1824-19 2367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons