myRT

myRT report for GCA_003464465.1_ASM346446v1

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Seq: QRYW01000035.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf35, whole genome shotgun sequence (55969 bp)
Overview 1 RT 1: 40834-45626 bp Neighborhood of RT #1 [40834, 45664] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 HTH_17 Feature: gene Location: 40834-41061 bp Feature: gene Location: 41177-42346 bp Ori: RGV21425.1 Feature: domain Description: Arm-DNA-bind_5 Location: 41207-41462 bp Feature: domain Description: Arm-DNA-bind_5 Location: 41 207-41 462 bp Feature: domain Description: Phage_int_SAM_5 Location: 41501-41822 bp Feature: domain Description: Phage_int_SAM_5 Location: 41 501 -41 822 bp Feature: domain Description: INTN1_C_like Location: 41861-42329 bp Feature: domain Description: INTN1 _C_like Location: 41 861 -42329 bp Feature: gene Location: 42897-44705 bp Ori: RGV21426.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43161-43983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 61 -43983 bp Feature: domain Description: Intron_maturas2 Location: 44109-44364 bp Feature: domain Description: Intron_maturas2 Location: 441 09-44364 bp Feature: gene Location: 44919-45281 bp Ori: RGV21427.1 Feature: domain Description: COG3943 Location: 44958-45207 bp Feature: domain Description: COG3943 Location: 44958-45207 bp Feature: gene Location: 45359-45664 bp Ori: RGV21428.1 Feature: domain Description: HTH_17 Location: 45497-45626 bp Feature: domain Description: HTH_1 7 Location: 45497-45626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728)

Seq: QRYW01000049.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf49, whole genome shotgun sequence (43960 bp)
Overview 1 RT 1: 5736-15199 bp Neighborhood of RT #1 [5736, 15396] N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C YhcG Feature: gene Location: 5736-9188 bp Feature: domain Description: N6_Mtase Location: 6027-6666 bp Feature: domain Description: N6_Mtase Location: 602 7-6666 bp Feature: domain Description: COG4646 Location: 8253-9186 bp Feature: domain Description: COG4646 Location: 82 53-9186 bp Feature: gene Location: 9291-9746 bp Feature: gene Location: 9753-11555 bp Ori: RGV19494.1 Feature: domain Description: matK Location: 9822-9909 bp Feature: domain Description: matK Location: 982 2 -9909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10017-10839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10017-10839 bp Feature: domain Description: Intron_maturas2 Location: 10989-11223 bp Feature: domain Description: Intron_maturas2 Location: 10989-112 2 3 bp Feature: gene Location: 11671-14319 bp Feature: domain Description: COG4646 Location: 11674-12793 bp Feature: domain Description: COG4646 Location: 11674-12 793 bp Feature: domain Description: Helicase_C Location: 12991-13210 bp Feature: domain Description: Helicase_C Location: 12 991-132 10 bp Feature: gene Location: 14383-15396 bp Ori: RGV19495.1 Feature: domain Description: YhcG Location: 14716-15199 bp Feature: domain Description: YhcG Location: 14716-15199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), YhcG (COG4804)

Seq: QRYW01000003.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf3, whole genome shotgun sequence (162850 bp)
Overview 1 RT 1: 81424-86905 bp Neighborhood of RT #1 [81424, 87123] AtoC RVT-GII Intron_maturas2 HNHc TMAO_torS Feature: gene Location: 81424-81735 bp Feature: gene Location: 81972-83294 bp Ori: RGV30214.1 Feature: domain Description: AtoC Location: 81978-83277 bp Feature: domain Description: AtoC Location: 81978-83 277 bp Feature: gene Location: 83894-85720 bp Ori: RGV30215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84179-85001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84179-85001 bp Feature: domain Description: Intron_maturas2 Location: 85073-85400 bp Feature: domain Description: Intron_maturas2 Location: 85073 -85400 bp Feature: domain Description: HNHc Note: nucleases Location: 85550-85697 bp Feature: domain Description: HNHc Note: nucleases Location: 85550-85697 bp Feature: gene Location: 85760-85834 bp Feature: gene Location: 85837-87123 bp Feature: domain Description: TMAO_torS Location: 85870-86905 bp Feature: domain Description: TMAO_torS Location: 85870-86905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TMAO_torS (TIGR02956)

Seq: QRYW01000052.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf52, whole genome shotgun sequence (40005 bp)
Overview 1 RT 1: 26306-30410 bp Neighborhood of RT #1 [26306, 30410] RVT-UG27 Feature: gene Location: 26306-26785 bp Feature: gene Location: 26835-27332 bp Feature: gene Location: 27655-28917 bp Ori: RGV19131.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 27847-28483 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2784 7-284 83 bp Feature: gene Location: 29081-29749 bp Feature: gene Location: 29763-30410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRYW01000016.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf16, whole genome shotgun sequence (94687 bp)
Overview 1 RT 1: 39489-46112 bp Neighborhood of RT #1 [39489, 46138] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_G Feature: gene Location: 39489-40484 bp Ori: RGV26793.1 Gene: traJ Feature: domain Description: Bac_Flav_CT_J Location: 39510-40473 bp Feature: domain Description: Bac_Flav_CT_J Location: 395 10-40473 bp Feature: gene Location: 40504-41040 bp Feature: gene Location: 41033-42868 bp Ori: RGV26795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41327-42149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41327-42149 bp Feature: domain Description: Intron_maturas2 Location: 42308-42677 bp Feature: domain Description: Intron_maturas2 Location: 42308-42677 bp Feature: domain Description: HNHc Note: nucleases Location: 42701-42842 bp Feature: domain Description: HNHc Note: nucleases Location: 42701-42842 bp Feature: gene Location: 43389-43613 bp Ori: RGV26796.1 Feature: domain Description: DUF4141 Location: 43401-43554 bp Feature: domain Description: DUF4141 Location: 43401-435 5 4 bp Feature: gene Location: 43625-46138 bp Ori: RGV26797.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 43628-46112 bp Feature: domain Description: Bac_Flav_CT_G Location: 43628-46112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783)

Seq: QRYW01000009.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf9, whole genome shotgun sequence (119132 bp)
Overview 1 RT 1: 100687-109019 bp Neighborhood of RT #1 [100687, 109024] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 100687-101001 bp Ori: RGV28510.1 Feature: domain Description: DUF3876 Location: 100741-100990 bp Feature: domain Description: DUF3876 Location: 100741-100990 bp Feature: gene Location: 101016-102722 bp Ori: RGV28511.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 101148-102714 bp Feature: domain Description: Bac_Flav_CT_G Location: 101148-102714 bp Feature: gene Location: 102707-104416 bp Ori: RGV28512.1 Gene: ltrA Feature: domain Description: RVT_N Location: 102809-103052 bp Feature: domain Description: RVT_N Location: 102809-103052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103097-103745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103097-103745 bp Feature: domain Description: GIIM Note: maturase Location: 103799-104030 bp Feature: domain Description: GIIM Note: maturase Location: 103799-104030 bp Feature: gene Location: 104970-105890 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 104973-105891 bp Feature: domain Description: Bac_Flav_CT_G Location: 104973-105891 bp Feature: gene Location: 105887-106210 bp Ori: RGV28532.1 Feature: domain Description: DUF4133 Location: 105941-106169 bp Feature: domain Description: DUF4133 Location: 105941-106 16 9 bp Feature: gene Location: 106270-108087 bp Ori: RGV28513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106534-107356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106 534-107356 bp Feature: domain Description: Intron_maturas2 Location: 107431-107758 bp Feature: domain Description: Intron_maturas2 Location: 107431-107758 bp Feature: domain Description: HNHc Note: nucleases Location: 107911-108061 bp Feature: domain Description: HNHc Note: nucleases Location: 107911-10806 1 bp Feature: gene Location: 108648-108710 bp Feature: gene Location: 108722-109024 bp Ori: RGV28514.1 Feature: domain Description: DUF4134 Location: 108752-109019 bp Feature: domain Description: DUF4134 Location: 108752-109019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: QRYW01000091.1 Odoribacter splanchnicus strain AF14-6AC AF14-6AC.Scaf91, whole genome shotgun sequence (2492 bp)
Overview 1 RT 1: 1-1968 bp Neighborhood of RT #1 [1, 1968] RVT_N RVT-GII GIIM Feature: gene Location: 1-147 bp Feature: gene Location: 126-1799 bp Ori: RGV15068.1 Gene: ltrA Feature: domain Description: RVT_N Location: 180-423 bp Feature: domain Description: RVT_N Location: 180-423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468-1116 bp Feature: domain Description: GIIM Note: maturase Location: 1170-1401 bp Feature: domain Description: GIIM Note: maturase Location: 117 0-1401 bp Feature: gene Location: 1765-1968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)