myRT

myRT report for GCA_003464505.1_ASM346450v1

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Seq: QRZA01000003.1 Butyricimonas virosa strain AF14-49 AF14-49.Scaf3, whole genome shotgun sequence (290948 bp)
Overview 1 RT 1: 238524-242457 bp Neighborhood of RT #1 [238524, 242457] RVT-UG27 Feature: gene Location: 238524-239003 bp Feature: gene Location: 239053-239550 bp Feature: gene Location: 239873-241135 bp Ori: RGV35954.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 240065-240701 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 240065-240701 bp Feature: gene Location: 241128-241796 bp Feature: gene Location: 241810-242457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRZA01000052.1 Butyricimonas virosa strain AF14-49 AF14-49.Scaf52, whole genome shotgun sequence (18421 bp)
Overview 1 RT 1: 1-5138 bp Neighborhood of RT #1 [1, 5158] Transposase_mut RVT-UG5 HipB HTH_XRE Feature: gene Location: 1-280 bp Ori: RGV30746.1 Feature: domain Description: Transposase_mut Location: 55-244 bp Feature: domain Description: Transposase_mut Location: 55-2 44 bp Feature: gene Location: 627-3707 bp Ori: RGV30747.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1173-1704 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1173-1704 bp Feature: gene Location: 4290-4604 bp Ori: RGV30748.1 Feature: domain Description: HipB Location: 4317-4584 bp Feature: domain Description: HipB Location: 4317-4584 bp Feature: gene Location: 4928-5158 bp Ori: RGV30749.1 Feature: domain Description: HTH_XRE Location: 4961-5138 bp Feature: domain Description: HTH_XRE Location: 4961-5138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-UG5, HipB (COG1396), HTH_XRE (smart00530)

Seq: QRZA01000027.1 Butyricimonas virosa strain AF14-49 AF14-49.Scaf27, whole genome shotgun sequence (63876 bp)
Overview 1 RT 1: 14418-22750 bp 2 RT 2: 43419-52882 bp Neighborhood of RT #1 [14418, 22755] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Neighborhood of RT #2 [43419, 53079] N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C YhcG Feature: gene Location: 14418-14732 bp Ori: RGV31803.1 Feature: domain Description: DUF3876 Location: 14472-14721 bp Feature: domain Description: DUF3 876 Location: 14472-14721 bp Feature: gene Location: 14747-16453 bp Ori: RGV31804.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 14879-16445 bp Feature: domain Description: Bac_Flav_CT_G Location: 14879-16445 bp Feature: gene Location: 16438-18147 bp Ori: RGV31805.1 Gene: ltrA Feature: domain Description: RVT_N Location: 16540-16783 bp Feature: domain Description: RVT_N Location: 16540-16783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16828-17476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16828-17476 bp Feature: domain Description: GIIM Note: maturase Location: 17530-17761 bp Feature: domain Description: GIIM Note: maturase Location: 1753 0-17761 bp Feature: gene Location: 18701-19621 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 18704-19622 bp Feature: domain Description: Bac_Flav_CT_G Location: 18704-19622 bp Feature: gene Location: 19618-19941 bp Ori: RGV31843.1 Feature: domain Description: DUF4133 Location: 19672-19900 bp Feature: domain Description: DUF413 3 Location: 19672-19900 bp Feature: gene Location: 20001-21818 bp Ori: RGV31806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20265-21087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20265-21087 bp Feature: domain Description: Intron_maturas2 Location: 21162-21489 bp Feature: domain Description: Intron_maturas2 Location: 21162-21489 bp Feature: domain Description: HNHc Note: nucleases Location: 21642-21792 bp Feature: domain Description: HNHc Note: nucleases Location: 21642-21792 bp Feature: gene Location: 22379-22441 bp Feature: gene Location: 22453-22755 bp Ori: RGV31807.1 Feature: domain Description: DUF4134 Location: 22483-22750 bp Feature: domain Description: DUF413 4 Location: 22483 -22750 bp Feature: gene Location: 43419-46871 bp Feature: domain Description: N6_Mtase Location: 43710-44349 bp Feature: domain Description: N6_Mtase Location: 43 710-443 49 bp Feature: domain Description: COG4646 Location: 45936-46869 bp Feature: domain Description: COG4646 Location: 4593 6-46869 bp Feature: gene Location: 46974-47429 bp Feature: gene Location: 47436-49238 bp Ori: RGV31830.1 Feature: domain Description: matK Location: 47505-47592 bp Feature: domain Description: matK Location: 47505-47592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47700-48522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47700-48522 bp Feature: domain Description: Intron_maturas2 Location: 48672-48906 bp Feature: domain Description: Intron_maturas2 Location: 48672-48906 bp Feature: gene Location: 49354-52002 bp Feature: domain Description: COG4646 Location: 49357-50476 bp Feature: domain Description: COG4646 Location: 493 57-50476 bp Feature: domain Description: Helicase_C Location: 50674-50893 bp Feature: domain Description: Helicase_C Location: 50674-50893 bp Feature: gene Location: 52066-53079 bp Ori: RGV31831.1 Feature: domain Description: YhcG Location: 52399-52882 bp Feature: domain Description: YhcG Location: 523 99-52882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572), N6_Mtase (pfam02384)
COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), Helicase_C (pfam00271), YhcG (COG4804)

Seq: QRZA01000007.1 Butyricimonas virosa strain AF14-49 AF14-49.Scaf7, whole genome shotgun sequence (188351 bp)
Overview 1 RT 1: 38961-43611 bp Neighborhood of RT #1 [38961, 43628] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc AtoC Feature: gene Location: 38961-39310 bp Ori: RGV34620.1 Feature: domain Description: DUF3876 Location: 39018-39285 bp Feature: domain Description: DUF3876 Location: 39018-39285 bp Feature: gene Location: 39322-39768 bp Feature: domain Description: Bac_Flav_CT_G Location: 39325-39742 bp Feature: domain Description: Bac_Flav_CT_G Location: 39325-3974 2 bp Feature: gene Location: 39880-41706 bp Ori: RGV34515.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40165-40987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 0165-4 0987 bp Feature: domain Description: Intron_maturas2 Location: 41059-41386 bp Feature: domain Description: Intron_maturas2 Location: 4 1059-4 1386 bp Feature: domain Description: HNHc Note: nucleases Location: 41536-41683 bp Feature: domain Description: HNHc Note: nucleases Location: 4 1536-4 1683 bp Feature: gene Location: 42004-42201 bp Feature: gene Location: 42306-43628 bp Ori: RGV34517.1 Feature: domain Description: AtoC Location: 42312-43611 bp Feature: domain Description: AtoC Location: 4 2312-4 3611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AtoC (COG2204)