myRT

myRT report for GCA_003464535.1_ASM346453v1

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Seq: QRZB01000013.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf13, whole genome shotgun sequence (119654 bp)
Overview 1 RT 1: 1-8233 bp Neighborhood of RT #1 [1, 8244] RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 1-209 bp Feature: gene Location: 221-283 bp Feature: gene Location: 844-2661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1108-1930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 08-1 930 bp Feature: domain Description: Intron_maturas2 Location: 2005-2332 bp Feature: domain Description: Intron_maturas2 Location: 2005-2332 bp Feature: domain Description: HNHc Note: nucleases Location: 2485-2635 bp Feature: domain Description: HNHc Note: nucleases Location: 2485-2635 bp Feature: gene Location: 2721-3044 bp Feature: domain Description: DUF4133 Location: 2775-3003 bp Feature: domain Description: DUF41 33 Location: 2775-3003 bp Feature: gene Location: 3041-3961 bp Feature: domain Description: Bac_Flav_CT_G Location: 3044-3962 bp Feature: domain Description: Bac_Flav_CT_G Location: 3044-3962 bp Feature: gene Location: 4515-6224 bp Feature: RT Description: RVT_N Location: 4617-4860 bp Feature: RT Description: RVT_N Location: 461 7-4860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4905-5553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4905-5553 bp Feature: domain Description: GIIM Note: maturase Location: 5607-5838 bp Feature: domain Description: GIIM Note: maturase Location: 5607-5838 bp Feature: gene Location: 6209-7915 bp Feature: domain Description: Bac_Flav_CT_G Location: 6341-7907 bp Feature: domain Description: Bac_Flav_CT_G Location: 6341 -7907 bp Feature: gene Location: 7930-8244 bp Feature: domain Description: DUF3876 Location: 7984-8233 bp Feature: domain Description: DUF3876 Location: 7984-8233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QRZB01000072.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf72, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 1-2382 bp Neighborhood of RT #1 [1, 2382] matK RVT-GII Intron_maturas2 Feature: gene Location: 1-131 bp Feature: gene Location: 118-1920 bp Feature: domain Description: matK Location: 187-274 bp Feature: domain Description: matK Location: 187-2 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 -12 04 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: gene Location: 1927-2382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRZB01000011.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf11, whole genome shotgun sequence (121027 bp)
Overview 1 RT 1: 57958-61666 bp Neighborhood of RT #1 [57958, 61666] RVT-DGRs Feature: gene Location: 57958-58209 bp Feature: gene Location: 58184-59518 bp Feature: gene Location: 59878-60888 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60088-60679 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60088-60679 bp Feature: gene Location: 60866-61249 bp Feature: gene Location: 61268-61666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRZB01000025.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf25, whole genome shotgun sequence (63755 bp)
Overview 1 RT 1: 47923-54378 bp Neighborhood of RT #1 [47923, 54587] APH Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 DUF2971 Feature: gene Location: 47923-49005 bp Feature: domain Description: APH Location: 47980-48709 bp Feature: domain Description: APH Location: 4 7980-4 8709 bp Feature: gene Location: 49361-50530 bp Feature: domain Description: Arm-DNA-bind_5 Location: 49391-49646 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4 9391-4 964 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 49685-50006 bp Feature: domain Description: Phage_int_SAM_5 Location: 4 9685-50006 bp Feature: domain Description: INTN1_C_like Location: 50045-50513 bp Feature: domain Description: INTN1_C_like Location: 5004 5-50513 bp Feature: gene Location: 51081-52889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51345-52167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5134 5-52167 bp Feature: domain Description: Intron_maturas2 Location: 52293-52548 bp Feature: domain Description: Intron_maturas2 Location: 52293-5254 8 bp Feature: gene Location: 53104-53466 bp Feature: domain Description: COG3943 Location: 53143-53395 bp Feature: domain Description: COG394 3 Location: 5314 3-53395 bp Feature: gene Location: 53574-54587 bp Feature: domain Description: DUF2971 Location: 54123-54378 bp Feature: domain Description: DUF2971 Location: 54 123-54 378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), DUF2971 (pfam11185)

Seq: QRZB01000071.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf71, whole genome shotgun sequence (2542 bp)
Overview 1 RT 1: 272-2019 bp Neighborhood of RT #1 [272, 2417] RVT_N RVT-GII GIIM Feature: gene Location: 272-493 bp Feature: gene Location: 684-2417 bp Feature: RT Description: RVT_N Location: 747-1017 bp Feature: RT Description: RVT_N Location: 747-1017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062-1728 bp Feature: domain Description: GIIM Note: maturase Location: 1785-2019 bp Feature: domain Description: GIIM Note: maturase Location: 1785 -2019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRZB01000006.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf6, whole genome shotgun sequence (169956 bp)
Overview 1 RT 1: 87769-90937 bp Neighborhood of RT #1 [87769, 90969] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 87769-88014 bp Feature: gene Location: 87998-88504 bp Feature: gene Location: 88572-90062 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 88965-89562 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8896 5-8956 2 bp Feature: gene Location: 90309-90620 bp Feature: domain Description: HTH_XRE Location: 90423-90576 bp Feature: domain Description: HTH_XRE Location: 90423-90576 bp Feature: gene Location: 90625-90969 bp Feature: domain Description: Gp49 Location: 90679-90937 bp Feature: domain Description: Gp49 Location: 906 79-90937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QRZB01000037.1 Bacteroides clarus strain AF14-44 AF14-44.Scaf37, whole genome shotgun sequence (29955 bp)
Overview 1 RT 1: 6353-10146 bp Neighborhood of RT #1 [6353, 10146] RVT-DGRs Feature: gene Location: 6353-7669 bp Feature: gene Location: 7924-8124 bp Feature: gene Location: 8186-9001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8519-8846 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8519-8846 bp Feature: gene Location: 9382-9729 bp Feature: gene Location: 9751-10146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs