myRT

myRT report for GCA_003464625.1_ASM346462v1

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Seq: QRZG01000025.1 Bacteroides clarus strain AF14-27 AF14-27.Scaf25, whole genome shotgun sequence (63767 bp)
Overview 1 RT 1: 47929-54384 bp Neighborhood of RT #1 [47929, 54593] APH Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 DUF2971 Feature: gene Location: 47929-49011 bp Feature: domain Description: APH Location: 47986-48715 bp Feature: domain Description: APH Location: 47986-4871 5 bp Feature: gene Location: 49367-50536 bp Feature: domain Description: Arm-DNA-bind_5 Location: 49397-49652 bp Feature: domain Description: Arm-DNA-bind_5 Location: 49397-49652 bp Feature: domain Description: Phage_int_SAM_5 Location: 49691-50012 bp Feature: domain Description: Phage_int_SAM_5 Location: 49691 -5001 2 bp Feature: domain Description: INTN1_C_like Location: 50051-50519 bp Feature: domain Description: INTN1 _C_like Location: 50051 -5051 9 bp Feature: gene Location: 51087-52895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51351-52173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 351 -521 73 bp Feature: domain Description: Intron_maturas2 Location: 52299-52554 bp Feature: domain Description: Intron_maturas2 Location: 52299-52554 bp Feature: gene Location: 53110-53472 bp Feature: domain Description: COG3943 Location: 53149-53401 bp Feature: domain Description: COG3943 Location: 531 49-53401 bp Feature: gene Location: 53580-54593 bp Feature: domain Description: DUF2971 Location: 54129-54384 bp Feature: domain Description: DUF2971 Location: 541 29-54384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), DUF2971 (pfam11185)

Seq: QRZG01000080.1 Bacteroides clarus strain AF14-27 AF14-27.Scaf80, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 1-2382 bp Neighborhood of RT #1 [1, 2382] matK RVT-GII Intron_maturas2 Feature: gene Location: 1-131 bp Feature: gene Location: 118-1920 bp Feature: domain Description: matK Location: 187-274 bp Feature: domain Description: matK Location: 187-2 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 -12 04 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: gene Location: 1927-2382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRZG01000003.1 Bacteroides clarus strain AF14-27 AF14-27.Scaf3, whole genome shotgun sequence (222166 bp)
Overview 1 RT 1: 78986-82186 bp Neighborhood of RT #1 [78986, 82186] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 78986-79330 bp Feature: domain Description: Gp49 Location: 79040-79298 bp Feature: domain Description: Gp49 Location: 79040-79298 bp Feature: gene Location: 79335-79646 bp Feature: domain Description: HTH_XRE Location: 79449-79602 bp Feature: domain Description: HTH_XRE Location: 79449-79602 bp Feature: gene Location: 79893-81383 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 80286-80883 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 80286-80883 bp Feature: gene Location: 81451-81957 bp Feature: gene Location: 81941-82186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: QRZG01000020.1 Bacteroides clarus strain AF14-27 AF14-27.Scaf20, whole genome shotgun sequence (70966 bp)
Overview 1 RT 1: 58120-61828 bp Neighborhood of RT #1 [58120, 61828] RVT-DGRs Feature: gene Location: 58120-58518 bp Feature: gene Location: 58537-58920 bp Feature: gene Location: 58898-59908 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59108-59699 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59108-59699 bp Feature: gene Location: 60268-61602 bp Feature: gene Location: 61577-61828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRZG01000012.1 Bacteroides clarus strain AF14-27 AF14-27.Scaf12, whole genome shotgun sequence (119668 bp)
Overview 1 RT 1: 111419-119668 bp Neighborhood of RT #1 [111419, 119668] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 111419-111733 bp Feature: domain Description: DUF3876 Location: 111473-111722 bp Feature: domain Description: DUF3876 Location: 111473-111722 bp Feature: gene Location: 111748-113454 bp Feature: domain Description: Bac_Flav_CT_G Location: 111880-113446 bp Feature: domain Description: Bac_Flav_CT_G Location: 111880-113446 bp Feature: gene Location: 113439-115148 bp Feature: RT Description: RVT_N Location: 113541-113784 bp Feature: RT Description: RVT_N Location: 1135 41-113784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113829-114477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113829-114477 bp Feature: domain Description: GIIM Note: maturase Location: 114531-114762 bp Feature: domain Description: GIIM Note: maturase Location: 1145 31-114762 bp Feature: gene Location: 115702-116622 bp Feature: domain Description: Bac_Flav_CT_G Location: 115705-116623 bp Feature: domain Description: Bac_Flav_CT_G Location: 115 705 -116623 bp Feature: gene Location: 116619-116942 bp Feature: domain Description: DUF4133 Location: 116673-116901 bp Feature: domain Description: DUF4133 Location: 116673-116901 bp Feature: gene Location: 117002-118819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117266-118088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117266-118088 bp Feature: domain Description: Intron_maturas2 Location: 118163-118490 bp Feature: domain Description: Intron_maturas2 Location: 118163-118490 bp Feature: domain Description: HNHc Note: nucleases Location: 118643-118793 bp Feature: domain Description: HNHc Note: nucleases Location: 118643-118793 bp Feature: gene Location: 119380-119442 bp Feature: gene Location: 119454-119668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), HNHc (smart00507)