myRT

myRT report for GCA_003464695.1_ASM346469v1

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Seq: QRZK01000020.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf20, whole genome shotgun sequence (81794 bp)
Overview 1 RT 1: 40858-46793 bp Neighborhood of RT #1 [40858, 47263] Toprim_2 RVT-GII Intron_maturas2 AAA_25 Feature: gene Location: 40858-42261 bp Feature: gene Location: 42544-43455 bp Feature: domain Description: Toprim_2 Location: 43078-43366 bp Feature: domain Description: Toprim_2 Location: 43078-43366 bp Feature: gene Location: 43445-45253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43709-44531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43709-44531 bp Feature: domain Description: Intron_maturas2 Location: 44600-44909 bp Feature: domain Description: Intron_maturas2 Location: 44600-44909 bp Feature: gene Location: 45817-45984 bp Feature: gene Location: 46196-47263 bp Feature: domain Description: AAA_25 Location: 46331-46793 bp Feature: domain Description: AAA_25 Location: 46331 -46793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), AAA_25 (pfam13481)

Seq: QRZK01000046.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf46, whole genome shotgun sequence (2488 bp)
Overview 1 RT 1: 1-2447 bp Neighborhood of RT #1 [1, 2447] RVT-GII Intron_maturas2 Feature: gene Location: 1-142 bp Feature: gene Location: 114-1925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-12 00 bp Feature: domain Description: Intron_maturas2 Location: 1269-1578 bp Feature: domain Description: Intron_maturas2 Location: 12 69-1578 bp Feature: gene Location: 1960-2447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRZK01000001.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf1, whole genome shotgun sequence (1116303 bp)
Overview 1 RT 1: 1022613-1026115 bp Neighborhood of RT #1 [1022613, 1026144] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 1022613-1022900 bp Feature: gene Location: 1023104-1023382 bp Feature: gene Location: 1023345-1024766 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1023720-1024422 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1023 720-1024422 bp Feature: gene Location: 1024781-1025188 bp Feature: domain Description: Avd_like Location: 1024814-1025123 bp Feature: domain Description: Avd_like Location: 1024814-1025123 bp Feature: gene Location: 1025335-1026144 bp Feature: domain Description: DUF1566 Location: 1025866-1026115 bp Feature: domain Description: DUF1566 Location: 1025866-1026115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QRZK01000030.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf30, whole genome shotgun sequence (33423 bp)
Overview 1 RT 1: 2290-11530 bp Neighborhood of RT #1 [2290, 11532] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII GIIM DUF418 Feature: gene Location: 2290-2742 bp Feature: domain Description: DUF1896 Location: 2320-2740 bp Feature: domain Description: DUF1896 Location: 2320-274 0 bp Feature: gene Location: 2732-7408 bp Feature: domain Description: N6_Mtase Location: 3041-3647 bp Feature: domain Description: N6_Mtase Location: 304 1-364 7 bp Feature: domain Description: COG4646 Location: 5024-7046 bp Feature: domain Description: COG4 64 6 Location: 5024 -704 6 bp Feature: gene Location: 8088-9755 bp Feature: RT Description: RVT_N Location: 8142-8385 bp Feature: RT Description: RVT_N Location: 814 2-8385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8430-9078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 30-9078 bp Feature: domain Description: GIIM Note: maturase Location: 9132-9363 bp Feature: domain Description: GIIM Note: maturase Location: 9132-9363 bp Feature: gene Location: 9757-11037 bp Feature: gene Location: 11224-11532 bp Feature: domain Description: DUF418 Location: 11284-11530 bp Feature: domain Description: DUF4 18 Location: 11284 -11530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRZK01000032.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf32, whole genome shotgun sequence (26228 bp)
Overview 1 RT 1: 3246-9740 bp Neighborhood of RT #1 [3246, 9740] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3246-4541 bp Feature: domain Description: Relaxase Location: 3423-3714 bp Feature: domain Description: Relaxase Location: 3423-3714 bp Feature: domain Description: Relaxase Location: 4023-4275 bp Feature: domain Description: Relaxase Location: 4023-4275 bp Feature: gene Location: 4807-5730 bp Feature: domain Description: YWFCY Location: 4813-4990 bp Feature: domain Description: YWFCY Location: 4813-4990 bp Feature: gene Location: 6367-8019 bp Feature: RT Description: RVT_N Location: 6421-6664 bp Feature: RT Description: RVT_N Location: 6421-6664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6709-7357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6709-735 7 bp Feature: domain Description: GIIM Note: maturase Location: 7411-7642 bp Feature: domain Description: GIIM Note: maturase Location: 7411-7642 bp Feature: gene Location: 8024-9229 bp Feature: domain Description: TraG-D_C Location: 8606-8939 bp Feature: domain Description: TraG-D_C Location: 8606-8939 bp Feature: gene Location: 9345-9740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QRZK01000049.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf49, whole genome shotgun sequence (2431 bp)
Overview 1 RT 1: 44-1920 bp Neighborhood of RT #1 [44, 2294] RVT_N RVT-GII GIIM Feature: gene Location: 44-343 bp Feature: gene Location: 639-2294 bp Feature: RT Description: RVT_N Location: 696-933 bp Feature: RT Description: RVT_N Location: 6 96 -933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984-1632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984-16 32 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: domain Description: GIIM Note: maturase Location: 16 89-1920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRZK01000003.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf3, whole genome shotgun sequence (495517 bp)
Overview 1 RT 1: 114516-126040 bp Neighborhood of RT #1 [114516, 126040] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 114516-116315 bp Feature: domain Description: rpsA Location: 114585-116199 bp Feature: domain Description: rpsA Location: 114585-116199 bp Feature: gene Location: 116484-122312 bp Feature: domain Description: DUF4011 Location: 117639-118152 bp Feature: domain Description: DUF4011 Location: 117 639-118152 bp Feature: domain Description: DEXXQc_SF1 Location: 118491-119091 bp Feature: domain Description: DEXXQc_SF1 Location: 118491-119091 bp Feature: domain Description: DEXXQc_SF1 Location: 119928-120678 bp Feature: domain Description: DEXXQc_SF1 Location: 119928-12067 8 bp Feature: domain Description: TIGR00376 Location: 120810-121200 bp Feature: domain Description: TIGR0037 6 Location: 120810-121200 bp Feature: domain Description: MTES_1575 Location: 121350-121638 bp Feature: domain Description: MTES_157 5 Location: 121350-121638 bp Feature: domain Description: DUF3320 Location: 121818-121962 bp Feature: domain Description: DUF3320 Location: 121818-121962 bp Feature: gene Location: 122346-123479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122670-123222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12267 0-123222 bp Feature: gene Location: 123685-125844 bp Feature: gene Location: 125804-126040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: QRZK01000045.1 Bacteroides thetaiotaomicron strain AF14-20 AF14-20.Scaf45, whole genome shotgun sequence (2495 bp)
Overview 1 RT 1: 1-1892 bp Neighborhood of RT #1 [1, 1921] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-101 bp Feature: gene Location: 110-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: domain Description: Intron_maturas2 Location: 1265-1592 bp Feature: domain Description: Intron_maturas2 Location: 1265-1592 bp Feature: domain Description: HNHc Note: nucleases Location: 1748-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 1748 -18 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)