myRT

myRT report for GCA_003464745.1_ASM346474v1

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Seq: QRZM01000006.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf6, whole genome shotgun sequence (327879 bp)
Overview 1 RT 1: 64338-68196 bp Neighborhood of RT #1 [64338, 68196] PBP2_TRAP_Siap HpcH RVT-GII GIIM Feature: gene Location: 64338-65432 bp Ori: RGV74769.1 Feature: domain Description: PBP2_TRAP_Siap Location: 64518-65418 bp Feature: domain Description: PBP2_TRAP_Siap Location: 6451 8-6541 8 bp Feature: gene Location: 65447-66220 bp Ori: RGV74770.1 Feature: domain Description: HpcH Location: 65453-66203 bp Feature: domain Description: HpcH Location: 65453-66203 bp Feature: gene Location: 66450-67841 bp Ori: RGV74771.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66765-67392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66765-67392 bp Feature: domain Description: GIIM Note: maturase Location: 67446-67674 bp Feature: domain Description: GIIM Note: maturase Location: 67446-67674 bp Feature: gene Location: 67941-68123 bp Feature: gene Location: 68110-68196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_Siap (cd13672), HpcH (COG3836), RVT-GII, GIIM (pfam08388)

Seq: QRZM01000045.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf45, whole genome shotgun sequence (2589 bp)
Overview 1 RT 1: 105-1908 bp Neighborhood of RT #1 [105, 1937] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Ori: RGV67358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-12 00 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: Intron_maturas2 Location: 12 72 -1587 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRZM01000018.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf18, whole genome shotgun sequence (88443 bp)
Overview 1 RT 1: 76830-80357 bp Neighborhood of RT #1 [76830, 80446] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 76830-77972 bp Ori: RGV70904.1 Feature: domain Description: PHA00653 Location: 76953-77970 bp Feature: domain Description: PHA00653 Location: 76953 -77970 bp Feature: gene Location: 78013-78369 bp Ori: RGV70905.1 Gene: avd Feature: domain Description: Avd_like Location: 78043-78349 bp Feature: domain Description: Avd_like Location: 78043 -783 49 bp Feature: gene Location: 78696-79757 bp Ori: RGV70906.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 78933-79554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7893 3 -79554 bp Feature: gene Location: 79782-79961 bp Feature: gene Location: 79958-80446 bp Ori: RGV70908.1 Feature: domain Description: Phage_holin_4_1 Location: 79997-80357 bp Feature: domain Description: Phage_holin_4_1 Location: 79997-803 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: QRZM01000042.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf42, whole genome shotgun sequence (2806 bp)
Overview 1 RT 1: 93-1860 bp Neighborhood of RT #1 [93, 2066] RVT-GII HNHc Feature: gene Location: 93-2066 bp Ori: RGV67564.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 29-1167 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QRZM01000020.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf20, whole genome shotgun sequence (74002 bp)
Overview 1 RT 1: 705-5474 bp Neighborhood of RT #1 [705, 5474] Maff2 VirD4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 705-923 bp Ori: RGV70578.1 Feature: domain Description: Maff2 Location: 708-915 bp Feature: domain Description: Maff2 Location: 708-915 bp Feature: gene Location: 1142-2500 bp Ori: RGV70579.1 Feature: domain Description: VirD4 Location: 1316-2399 bp Feature: domain Description: VirD4 Location: 1316-2399 bp Feature: gene Location: 2591-4408 bp Ori: RGV70580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2855-3674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285 5 -3674 bp Feature: domain Description: Intron_maturas2 Location: 3746-4049 bp Feature: domain Description: Intron_maturas2 Location: 3746-4049 bp Feature: domain Description: HNHc Note: nucleases Location: 4229-4373 bp Feature: domain Description: HNHc Note: nucleases Location: 4229-4373 bp Feature: gene Location: 4374-4569 bp Feature: gene Location: 4968-5474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRZM01000004.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf4, whole genome shotgun sequence (530516 bp)
Overview 1 RT 1: 255423-259332 bp Neighborhood of RT #1 [255423, 259337] spoVFB NAT_SF YoaP RVT-Retrons UgpE Feature: gene Location: 255423-256007 bp Ori: RGV76076.1 Feature: domain Description: spoVFB Location: 255426-255996 bp Feature: domain Description: spoVFB Location: 255426 -255996 bp Feature: gene Location: 256310-257053 bp Ori: RGV76077.1 Feature: domain Description: NAT_SF Location: 256517-256634 bp Feature: domain Description: NAT_SF Location: 256 517-256 6 34 bp Feature: domain Description: YoaP Location: 256916-257042 bp Feature: domain Description: YoaP Location: 256 916 -257042 bp Feature: gene Location: 257065-258072 bp Ori: RGV76078.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 257230-257785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 257230-257785 bp Feature: gene Location: 258293-258496 bp Feature: gene Location: 258504-259337 bp Ori: RGV76080.1 Feature: domain Description: UgpE Location: 258519-259332 bp Feature: domain Description: UgpE Location: 258519-259332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395)

Seq: QRZM01000033.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf33, whole genome shotgun sequence (12052 bp)
Overview 1 RT 1: 1-3928 bp Neighborhood of RT #1 [1, 4107] Maff2 RVT-GII HNHc Maff2 HTH_XRE Feature: gene Location: 1-635 bp Feature: gene Location: 661-759 bp Feature: domain Description: Maff2 Location: 664-754 bp Feature: domain Description: Maff2 Location: 664-7 54 bp Feature: gene Location: 909-2795 bp Ori: RGV68051.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1242-1980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1242-1980 bp Feature: domain Description: HNHc Note: nucleases Location: 2517-2679 bp Feature: domain Description: HNHc Note: nucleases Location: 2517 -267 9 bp Feature: gene Location: 3500-3631 bp Ori: RGV68052.1 Feature: domain Description: Maff2 Location: 3503-3629 bp Feature: domain Description: Maff2 Location: 3503-3629 bp Feature: gene Location: 3715-4107 bp Ori: RGV68053.1 Feature: domain Description: HTH_XRE Location: 3748-3928 bp Feature: domain Description: HTH_XRE Location: 37 48-3928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530)

Seq: QRZM01000012.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf12, whole genome shotgun sequence (158071 bp)
Overview 1 RT 1: 72471-81225 bp Neighborhood of RT #1 [72471, 81302] AraH MglA RVT-GII RVT-GII GIIM DDE_5 DDE_Tnp_1 sigma70-ECF RVT-GII GIIM ParE_toxin PhdYeFM_antitox Feature: gene Location: 72471-73427 bp Ori: RGV72858.1 Feature: domain Description: AraH Location: 72489-73398 bp Feature: domain Description: AraH Location: 7248 9-73398 bp Feature: gene Location: 73405-74166 bp Ori: RGV72939.1 Feature: domain Description: MglA Location: 73417-74146 bp Feature: domain Description: MglA Location: 73417-74146 bp Feature: gene Location: 74934-75431 bp Ori: RGV72859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75300-75375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75300-75375 bp Feature: gene Location: 75428-75976 bp Ori: RGV72940.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75455-75608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75455-75608 bp Feature: domain Description: GIIM Note: maturase Location: 75668-75893 bp Feature: domain Description: GIIM Note: maturase Location: 75668 -758 93 bp Feature: gene Location: 76458-77090 bp Ori: RGV72860.1 Feature: domain Description: DDE_5 Location: 76614-76980 bp Feature: domain Description: DDE_5 Location: 76614-7698 0 bp Feature: gene Location: 77078-77746 bp Ori: RGV72861.1 Feature: domain Description: DDE_Tnp_1 Location: 77120-77588 bp Feature: domain Description: DDE_Tnp_1 Location: 77120-7758 8 bp Feature: gene Location: 78278-78781 bp Ori: RGV72863.1 Feature: domain Description: sigma70-ECF Location: 78452-78764 bp Feature: domain Description: sigma70-ECF Location: 78 452-78 764 bp Feature: gene Location: 78864-79175 bp Feature: gene Location: 79322-80602 bp Ori: RGV72941.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79532-80147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79532-8 0147 bp Feature: domain Description: GIIM Note: maturase Location: 80210-80429 bp Feature: domain Description: GIIM Note: maturase Location: 8 0210-8 0429 bp Feature: gene Location: 80735-81052 bp Ori: RGV72865.1 Feature: domain Description: ParE_toxin Location: 80753-81038 bp Feature: domain Description: ParE_toxin Location: 8 0753-8 1038 bp Feature: gene Location: 81042-81302 bp Ori: RGV72866.1 Feature: domain Description: PhdYeFM_antitox Location: 81051-81225 bp Feature: domain Description: PhdYeFM_antitox Location: 8 1051-8 1225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraH (COG1172), MglA (COG1129), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), DDE_Tnp_1 (pfam01609), sigma70-ECF (TIGR02937), ParE_toxin (pfam05016), PhdYeFM_antitox (pfam02604)

Seq: QRZM01000005.1 [Clostridium] bolteae strain AF14-18 AF14-18.Scaf5, whole genome shotgun sequence (469767 bp)
Overview 1 RT 1: 4424-9544 bp Neighborhood of RT #1 [4424, 9666] Spr RVT-GII Intron_maturas2 HNHc DUF4315 DUF4366 Feature: gene Location: 4424-6046 bp Ori: RGV75278.1 Feature: domain Description: Spr Location: 5720-5987 bp Feature: domain Description: Spr Location: 5720-59 87 bp Feature: gene Location: 6187-6432 bp Feature: gene Location: 6638-8428 bp Ori: RGV75280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6905-7718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69 05-7718 bp Feature: domain Description: Intron_maturas2 Location: 7793-8216 bp Feature: domain Description: Intron_maturas2 Location: 779 3-8216 bp Feature: domain Description: HNHc Note: nucleases Location: 8255-8408 bp Feature: domain Description: HNHc Note: nucleases Location: 8255-8408 bp Feature: gene Location: 8642-8899 bp Ori: RGV75281.1 Feature: domain Description: DUF4315 Location: 8657-8891 bp Feature: domain Description: DUF4315 Location: 8657-889 1 bp Feature: gene Location: 8896-9666 bp Ori: RGV75282.1 Feature: domain Description: DUF4366 Location: 9079-9544 bp Feature: domain Description: DUF4366 Location: 9 079 -9 544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193), DUF4366 (pfam14283)