myRT

myRT report for GCA_003464865.1_ASM346486v1

Download annotations/find similar RTs

Seq: QRZX01000076.1 Ruminococcus sp. AF13-37 AF13-37.Scaf76, whole genome shotgun sequence (2590 bp)
Overview 1 RT 1: 105-1908 bp Neighborhood of RT #1 [105, 1937] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Ori: RGW12794.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1 200 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: Intron_maturas2 Location: 1 272-1 587 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1 734-1 908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRZX01000084.1 Ruminococcus sp. AF13-37 AF13-37.Scaf84, whole genome shotgun sequence (1853 bp)
Overview 1 RT 1: 497-1610 bp Neighborhood of RT #1 [497, 1774] RVT-GII GIIM Feature: gene Location: 497-1774 bp Ori: RGW12559.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-132 5 bp Feature: domain Description: GIIM Note: maturase Location: 1391-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1391-1610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRZX01000043.1 Ruminococcus sp. AF13-37 AF13-37.Scaf43, whole genome shotgun sequence (24462 bp)
Overview 1 RT 1: 16200-20830 bp Neighborhood of RT #1 [16200, 20838] RVT-GII COG3666 DDE_Tnp_1 PRK09912 Feature: gene Location: 16200-16412 bp Feature: gene Location: 16361-16504 bp Feature: gene Location: 16615-18008 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16933-17017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1693 3 -17017 bp Feature: gene Location: 18155-19679 bp Feature: domain Description: COG3666 Location: 18188-18599 bp Feature: domain Description: COG3 666 Location: 18188-18599 bp Feature: domain Description: DDE_Tnp_1 Location: 18914-19274 bp Feature: domain Description: DDE_Tnp_1 Location: 18914-19274 bp Feature: gene Location: 19831-20838 bp Ori: RGW15944.1 Feature: domain Description: PRK09912 Location: 19861-20830 bp Feature: domain Description: PRK09912 Location: 19861-2083 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), PRK09912 (L-glyceraldehyde 3-phosphate reductase; Provisional)

Seq: QRZX01000075.1 Ruminococcus sp. AF13-37 AF13-37.Scaf75, whole genome shotgun sequence (2627 bp)
Overview 1 RT 1: 177-2433 bp Neighborhood of RT #1 [177, 2433] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 177-1973 bp Ori: RGW12795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 444-1254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 4 -1254 bp Feature: domain Description: Intron_maturas2 Location: 1320-1632 bp Feature: domain Description: Intron_maturas2 Location: 1320-1632 bp Feature: domain Description: HNHc Note: nucleases Location: 1791-1947 bp Feature: domain Description: HNHc Note: nucleases Location: 1791-194 7 bp Feature: gene Location: 2208-2433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRZX01000001.1 Ruminococcus sp. AF13-37 AF13-37.Scaf1, whole genome shotgun sequence (318365 bp)
Overview 1 RT 1: 183703-188053 bp Neighborhood of RT #1 [183703, 188053] RVT-DGRs DUF3789 Feature: gene Location: 183703-185664 bp Feature: gene Location: 185690-186163 bp Feature: gene Location: 186368-187441 bp Ori: RGW23176.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 186623-187199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 186623-187199 bp Feature: gene Location: 187746-187847 bp Ori: RGW23177.1 Feature: domain Description: DUF3789 Location: 187764-187839 bp Feature: domain Description: DUF3789 Location: 187764-187839 bp Feature: gene Location: 187844-188053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3789 (pfam12664)

Seq: QRZX01000044.1 Ruminococcus sp. AF13-37 AF13-37.Scaf44, whole genome shotgun sequence (24239 bp)
Overview 1 RT 1: 12206-15745 bp Neighborhood of RT #1 [12206, 15891] ManC RVT-GII HxlR AAA_18 Feature: gene Location: 12206-12436 bp Feature: gene Location: 12537-12890 bp Ori: RGW15675.1 Feature: domain Description: ManC Location: 12663-12855 bp Feature: domain Description: ManC Location: 126 6 3-12855 bp Feature: gene Location: 13524-14789 bp Ori: RGW15676.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13773-14436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13773-14436 bp Feature: gene Location: 14934-15266 bp Ori: RGW15677.1 Feature: domain Description: HxlR Location: 14952-15261 bp Feature: domain Description: HxlR Location: 14952-1526 1 bp Feature: gene Location: 15346-15891 bp Ori: RGW15678.1 Feature: domain Description: AAA_18 Location: 15367-15745 bp Feature: domain Description: AAA_18 Location: 1536 7-15745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManC (COG0662), RVT-GII, HxlR (pfam01638), AAA_18 (pfam13238)