myRT

myRT report for GCA_003464875.1_ASM346487v1

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Seq: QSAA01000052.1 [Ruminococcus] gnavus strain AF13-14A AF13-14A.Scaf52, whole genome shotgun sequence (9303 bp)
Overview 1 RT 1: 1-4528 bp Neighborhood of RT #1 [1, 4548] RVT_N RVT-GII AslB Feature: gene Location: 1-1159 bp Feature: RT Description: RVT_N Location: 19-253 bp Feature: RT Description: RVT_N Location: 1 9-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-784 bp Feature: gene Location: 2892-3071 bp Feature: gene Location: 3172-4548 bp Feature: domain Description: AslB Location: 3394-4528 bp Feature: domain Description: AslB Location: 3394-4528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, AslB (COG0641)

Seq: QSAA01000005.1 [Ruminococcus] gnavus strain AF13-14A AF13-14A.Scaf5, whole genome shotgun sequence (149887 bp)
Overview 1 RT 1: 3738-11439 bp Neighborhood of RT #1 [3738, 11439] TcpE AAA_10 RVT-GII AAA_10 Feature: gene Location: 3738-4127 bp Feature: domain Description: TcpE Location: 3756-4053 bp Feature: domain Description: TcpE Location: 3756-4053 bp Feature: gene Location: 4114-5616 bp Feature: domain Description: AAA_10 Location: 5443-5614 bp Feature: domain Description: AAA_10 Location: 5443-5614 bp Feature: gene Location: 6361-8187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6661-7360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6661-7360 bp Feature: gene Location: 8222-9244 bp Feature: domain Description: AAA_10 Location: 8303-9206 bp Feature: domain Description: AAA_10 Location: 8303-92 06 bp Feature: gene Location: 9244-11439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII

Seq: QSAA01000097.1 [Ruminococcus] gnavus strain AF13-14A AF13-14A.Scaf97, whole genome shotgun sequence (1874 bp)
Overview 1 RT 1: 92-1656 bp Neighborhood of RT #1 [92, 1656] RVT-GII Feature: gene Location: 92-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47-103 7 bp Feature: gene Location: 1477-1656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSAA01000004.1 [Ruminococcus] gnavus strain AF13-14A AF13-14A.Scaf4, whole genome shotgun sequence (155642 bp)
Overview 1 RT 1: 124937-130325 bp Neighborhood of RT #1 [124937, 130363] BaeS trans_reg_C RVT-GII VirD4 HipB DUF3955 Feature: gene Location: 124937-126094 bp Feature: domain Description: BaeS Location: 125171-126080 bp Feature: domain Description: BaeS Location: 125171-126080 bp Feature: gene Location: 126091-126378 bp Feature: domain Description: trans_reg_C Location: 126097-126358 bp Feature: domain Description: trans_reg_C Location: 126097-126358 bp Feature: gene Location: 126447-128354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126777-127521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126777-127521 bp Feature: gene Location: 128516-129556 bp Feature: domain Description: VirD4 Location: 128636-129425 bp Feature: domain Description: VirD4 Location: 128636-1294 25 bp Feature: gene Location: 129881-130363 bp Feature: domain Description: HipB Location: 129890-130151 bp Feature: domain Description: HipB Location: 129890-130151 bp Feature: domain Description: DUF3955 Location: 130160-130325 bp Feature: domain Description: DUF3955 Location: 130160-130325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), trans_reg_C (cd00383), RVT-GII, VirD4 (COG3505), HipB (COG1396), DUF3955 (pfam13127)