myRT

myRT report for GCA_003465275.1_ASM346527v1

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Seq: QRZQ01000031.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf31, whole genome shotgun sequence (11840 bp)
Overview 1 RT 1: 5904-11840 bp Neighborhood of RT #1 [5904, 11840] N6_Mtase COG4646 matK RVT-GII Intron_maturas2 Feature: gene Location: 5904-9356 bp Feature: domain Description: N6_Mtase Location: 6195-6834 bp Feature: domain Description: N6_Mtase Location: 61 95-6834 bp Feature: domain Description: COG4646 Location: 8421-9354 bp Feature: domain Description: COG4646 Location: 8421 -9354 bp Feature: gene Location: 9459-9914 bp Feature: gene Location: 9921-11723 bp Ori: RGV92621.1 Feature: domain Description: matK Location: 9990-10077 bp Feature: domain Description: matK Location: 9990-1 0077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10185-11007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 85-1 1 007 bp Feature: domain Description: Intron_maturas2 Location: 11157-11391 bp Feature: domain Description: Intron_maturas2 Location: 1 1 1 57-1 1 391 bp Feature: gene Location: 11710-11840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRZQ01000004.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf4, whole genome shotgun sequence (513820 bp)
Overview 1 RT 1: 166028-169824 bp Neighborhood of RT #1 [166028, 169824] RVT-DGRs Feature: gene Location: 166028-167347 bp Feature: gene Location: 167602-167802 bp Feature: gene Location: 167864-168679 bp Ori: RGW01599.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 168197-168521 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 168197-16852 1 bp Feature: gene Location: 169060-169407 bp Feature: gene Location: 169429-169824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRZQ01000007.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf7, whole genome shotgun sequence (315188 bp)
Overview 1 RT 1: 281786-294326 bp 2 RT 2: 309509-315188 bp Neighborhood of RT #1 [281786, 294326] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Neighborhood of RT #2 [309509, 315188] N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 Feature: gene Location: 281786-283588 bp Ori: RGW00108.1 Feature: domain Description: rpsA Location: 281855-283472 bp Feature: domain Description: rpsA Location: 281855-283 472 bp Feature: gene Location: 283685-289642 bp Ori: RGW00109.1 Feature: domain Description: DUF4011 Location: 284915-285428 bp Feature: domain Description: DUF4011 Location: 284915-285428 bp Feature: domain Description: DEXXQc_SF1 Location: 285767-286733 bp Feature: domain Description: DEXXQc_SF1 Location: 285767-28673 3 bp Feature: domain Description: DEXXQc_SF1 Location: 287195-287954 bp Feature: domain Description: DEXXQc_SF1 Location: 287195-287954 bp Feature: domain Description: TIGR00376 Location: 288083-288473 bp Feature: domain Description: TIGR003 76 Location: 288083 -288473 bp Feature: domain Description: MTES_1575 Location: 288626-288911 bp Feature: domain Description: MTES_1575 Location: 288626-288911 bp Feature: domain Description: DUF3320 Location: 289151-289292 bp Feature: domain Description: DUF3 3 20 Location: 289151-289292 bp Feature: gene Location: 289644-290774 bp Ori: RGW00110.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 289965-290508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 289965-290508 bp Feature: gene Location: 290980-293142 bp Feature: gene Location: 293853-294326 bp Feature: gene Location: 309509-312688 bp Feature: domain Description: N6_Mtase Location: 309821-309929 bp Feature: domain Description: N6_Mtase Location: 3 09821-3 09929 bp Feature: domain Description: N6_Mtase Location: 310067-310424 bp Feature: domain Description: N6_Mtase Location: 3 10067-3 10424 bp Feature: domain Description: COG4646 Location: 311753-312689 bp Feature: domain Description: COG4646 Location: 3 11753 -3 12689 bp Feature: gene Location: 312807-313262 bp Feature: gene Location: 313269-315071 bp Ori: RGW00126.1 Feature: domain Description: matK Location: 313338-313425 bp Feature: domain Description: matK Location: 3 13 3 3 8-3 13 425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313533-314355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 13 53 3 -3 143 55 bp Feature: domain Description: Intron_maturas2 Location: 314505-314739 bp Feature: domain Description: Intron_maturas2 Location: 3 14505-3 1473 9 bp Feature: gene Location: 315058-315188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002)
RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRZQ01000008.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf8, whole genome shotgun sequence (265833 bp)
Overview 1 RT 1: 142600-152822 bp 2 RT 2: 192852-197533 bp Neighborhood of RT #1 [142600, 152833] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [192852, 197533] HTH_Hin_like RVT-UG27 Feature: gene Location: 142600-144429 bp Feature: gene Location: 144492-144845 bp Feature: gene Location: 144836-146257 bp Ori: RGV99638.1 Feature: domain Description: DUF1566 Location: 144908-145052 bp Feature: domain Description: DUF1566 Location: 14 4 908-14 5052 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 145241-145982 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14 524 1-14 5982 bp Feature: gene Location: 146270-146671 bp Ori: RGV99639.1 Feature: domain Description: Avd_like Location: 146309-146648 bp Feature: domain Description: Avd_like Location: 14 6309-14 664 8 bp Feature: gene Location: 146801-152833 bp Ori: RGV99640.1 Feature: domain Description: DUF1566 Location: 152516-152822 bp Feature: domain Description: DUF1566 Location: 152516-152822 bp Feature: gene Location: 192852-193454 bp Feature: gene Location: 193444-193767 bp Ori: RGV99688.1 Feature: domain Description: HTH_Hin_like Location: 193495-193597 bp Feature: domain Description: HTH_Hin_like Location: 1934 95-193597 bp Feature: gene Location: 193764-195032 bp Ori: RGV99689.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 193953-194589 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 193953-194 589 bp Feature: gene Location: 196051-196509 bp Feature: gene Location: 196544-197533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), HTH_Hin_like (cd00569), RVT-UG27

Seq: QRZQ01000001.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf1, whole genome shotgun sequence (770034 bp)
Overview 1 RT 1: 755662-763994 bp Neighborhood of RT #1 [755662, 763999] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 755662-755976 bp Ori: RGW04059.1 Feature: domain Description: DUF3876 Location: 755716-755965 bp Feature: domain Description: DUF3876 Location: 75 5 716-75 5 965 bp Feature: gene Location: 755991-757697 bp Ori: RGW04060.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 756123-757689 bp Feature: domain Description: Bac_Flav_CT_G Location: 75 6123-75 7689 bp Feature: gene Location: 757682-759391 bp Ori: RGW04061.1 Gene: ltrA Feature: domain Description: RVT_N Location: 757784-758027 bp Feature: domain Description: RVT_N Location: 75 7784-75 8027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758072-758720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 8072-75 8720 bp Feature: domain Description: GIIM Note: maturase Location: 758774-759005 bp Feature: domain Description: GIIM Note: maturase Location: 75 8774-75 9005 bp Feature: gene Location: 759945-760865 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 759948-760866 bp Feature: domain Description: Bac_Flav_CT_G Location: 75 9948-760866 bp Feature: gene Location: 760862-761185 bp Ori: RGW04128.1 Feature: domain Description: DUF4133 Location: 760916-761144 bp Feature: domain Description: DUF4133 Location: 760916-761144 bp Feature: gene Location: 761245-763062 bp Ori: RGW04062.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761509-762331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7615 09-762331 bp Feature: domain Description: Intron_maturas2 Location: 762406-762733 bp Feature: domain Description: Intron_maturas2 Location: 762406-762733 bp Feature: domain Description: HNHc Note: nucleases Location: 762886-763036 bp Feature: domain Description: HNHc Note: nucleases Location: 762886-763036 bp Feature: gene Location: 763623-763685 bp Feature: gene Location: 763697-763999 bp Ori: RGW04063.1 Feature: domain Description: DUF4134 Location: 763727-763994 bp Feature: domain Description: DUF4134 Location: 763727-763994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: QRZQ01000028.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf28, whole genome shotgun sequence (26871 bp)
Overview 1 RT 1: 57-4712 bp 2 RT 2: 17970-21748 bp Neighborhood of RT #1 [57, 4951] RVT_N RVT-GII YWFCY Relaxase Relaxase Neighborhood of RT #2 [17970, 21813] zf-CHC2 RVT-GII Intron_maturas2 Toprim_2 DUF3872 Feature: gene Location: 57-407 bp Feature: gene Location: 412-2066 bp Gene: ltrA Feature: domain Description: RVT_N Location: 466-709 bp Feature: domain Description: RVT_N Location: 46 6 -709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1000 bp Feature: gene Location: 2706-3626 bp Feature: domain Description: YWFCY Location: 2712-2889 bp Feature: domain Description: YWFCY Location: 2712-2889 bp Feature: gene Location: 3689-4951 bp Ori: RGV92919.1 Feature: domain Description: Relaxase Location: 3830-4289 bp Feature: domain Description: Relaxase Location: 3830-4289 bp Feature: domain Description: Relaxase Location: 4499-4712 bp Feature: domain Description: Relaxase Location: 4499-4712 bp Feature: gene Location: 17970-18137 bp Feature: domain Description: zf-CHC2 Location: 17997-18132 bp Feature: domain Description: zf-CHC2 Location: 17997-18132 bp Feature: gene Location: 18242-18665 bp Feature: gene Location: 18700-20508 bp Ori: RGV92935.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18964-19786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1896 4-19786 bp Feature: domain Description: Intron_maturas2 Location: 19855-20164 bp Feature: domain Description: Intron_maturas2 Location: 19855-2016 4 bp Feature: gene Location: 20498-21313 bp Ori: RGV92936.1 Feature: domain Description: Toprim_2 Location: 21032-21290 bp Feature: domain Description: Toprim_2 Location: 21032-21290 bp Feature: gene Location: 21310-21813 bp Ori: RGV92937.1 Feature: domain Description: DUF3872 Location: 21361-21748 bp Feature: domain Description: DUF3872 Location: 2136 1-21748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YWFCY (pfam14293), Relaxase (pfam03432), zf-CHC2 (pfam01807), Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), DUF3872 (pfam12988)

Seq: QRZQ01000038.1 Bacteroides ovatus strain AF14-13AC AF14-13AC.Scaf38, whole genome shotgun sequence (2479 bp)
Overview 1 RT 1: 399-2479 bp Neighborhood of RT #1 [399, 2479] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 399-587 bp Feature: gene Location: 541-2358 bp Ori: RGV92431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808-1630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 808-1630 bp Feature: domain Description: Intron_maturas2 Location: 1741-2008 bp Feature: domain Description: Intron_maturas2 Location: 17 41-2008 bp Feature: domain Description: HNHc Note: nucleases Location: 2179-2329 bp Feature: domain Description: HNHc Note: nucleases Location: 217 9-2329 bp Feature: gene Location: 2322-2479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)