myRT

myRT report for GCA_003465625.1_ASM346562v1

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Seq: QSBD01000015.1 Bacteroides stercoris strain AF05-4 AF05-4.Scaf15, whole genome shotgun sequence (98665 bp)
Overview 1 RT 1: 141-5352 bp 2 RT 2: 10507-16456 bp Neighborhood of RT #1 [141, 5369] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY T4SS-DNA_transf Neighborhood of RT #2 [10507, 16456] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 141-554 bp Feature: gene Location: 844-2022 bp Ori: RGW96452.1 Feature: domain Description: TraG-D_C Location: 1369-1702 bp Feature: domain Description: TraG-D_C Location: 1 369-1 702 bp Feature: gene Location: 2009-3814 bp Ori: RGW96453.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273-3095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273-3095 bp Feature: domain Description: Intron_maturas2 Location: 3173-3503 bp Feature: domain Description: Intron_maturas2 Location: 31 73-3503 bp Feature: domain Description: HNHc Note: nucleases Location: 3647-3791 bp Feature: domain Description: HNHc Note: nucleases Location: 3647-3791 bp Feature: gene Location: 3848-4321 bp Feature: gene Location: 4380-5369 bp Feature: domain Description: YWFCY Location: 4386-4563 bp Feature: domain Description: YWFCY Location: 4386-4563 bp Feature: domain Description: T4SS-DNA_transf Location: 4854-5352 bp Feature: domain Description: T4SS-DNA_transf Location: 4854-5352 bp Feature: gene Location: 10507-10830 bp Ori: RGW96462.1 Feature: domain Description: DUF4133 Location: 10522-10792 bp Feature: domain Description: DUF41 33 Location: 1 0522-1 0792 bp Feature: gene Location: 10827-12896 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 10830-12897 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 0830-1 2897 bp Feature: gene Location: 13471-15282 bp Ori: RGW96463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13735-14557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3735-1 4557 bp Feature: domain Description: Intron_maturas2 Location: 14632-14959 bp Feature: domain Description: Intron_maturas2 Location: 1 4632-1 4959 bp Feature: domain Description: HNHc Note: nucleases Location: 15103-15253 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 03-1 5253 bp Feature: gene Location: 15390-15836 bp Feature: domain Description: Bac_Flav_CT_G Location: 15393-15801 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 5393-1 5801 bp Feature: gene Location: 15833-16456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), T4SS-DNA_transf (pfam02534), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: QSBD01000050.1 Bacteroides stercoris strain AF05-4 AF05-4.Scaf50, whole genome shotgun sequence (6159 bp)
Overview 1 RT 1: 693-6159 bp Neighborhood of RT #1 [693, 6159] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 693-1760 bp Ori: RGW92559.1 Feature: domain Description: AAA_25 Location: 828-1290 bp Feature: domain Description: AAA_2 5 Location: 82 8-12 90 bp Feature: gene Location: 1972-2139 bp Feature: gene Location: 2703-4511 bp Ori: RGW92560.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2967-3789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 967-3789 bp Feature: domain Description: Intron_maturas2 Location: 3858-4167 bp Feature: domain Description: Intron_maturas2 Location: 3858-4167 bp Feature: gene Location: 4501-5412 bp Ori: RGW92561.1 Feature: domain Description: Toprim_2 Location: 5035-5323 bp Feature: domain Description: Toprim_2 Location: 5035-532 3 bp Feature: gene Location: 5695-6159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSBD01000030.1 Bacteroides stercoris strain AF05-4 AF05-4.Scaf30, whole genome shotgun sequence (44106 bp)
Overview 1 RT 1: 10702-13851 bp 2 RT 2: 18755-23885 bp Neighborhood of RT #1 [10702, 13853] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Neighborhood of RT #2 [18755, 23887] YWFCY RVT_N RVT-GII GIIM TraG-D_C PRK00331 Feature: gene Location: 10702-11034 bp Ori: RGW94258.1 Feature: domain Description: DUF4133 Location: 10720-10990 bp Feature: domain Description: DUF413 3 Location: 10720-10990 bp Feature: gene Location: 11045-11215 bp Feature: domain Description: DUF4134 Location: 11048-11210 bp Feature: domain Description: DUF413 4 Location: 11048-11210 bp Feature: gene Location: 11332-13038 bp Ori: RGW94278.1 Gene: ltrA Feature: domain Description: RVT_N Location: 11395-11638 bp Feature: domain Description: RVT_N Location: 113 95-1163 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11683-12349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11683 -123 49 bp Feature: domain Description: GIIM Note: maturase Location: 12406-12640 bp Feature: domain Description: GIIM Note: maturase Location: 12406-12640 bp Feature: gene Location: 13229-13450 bp Feature: gene Location: 13707-13853 bp Feature: domain Description: DUF4134 Location: 13749-13851 bp Feature: domain Description: DUF413 4 Location: 13 749-13 851 bp Feature: gene Location: 18755-19678 bp Feature: domain Description: YWFCY Location: 18764-18941 bp Feature: domain Description: YWFCY Location: 18764-18941 bp Feature: gene Location: 20047-20244 bp Feature: gene Location: 20319-21971 bp Ori: RGW94267.1 Gene: ltrA Feature: domain Description: RVT_N Location: 20373-20616 bp Feature: domain Description: RVT_N Location: 203 73 -20616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20661-21309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20661-213 09 bp Feature: domain Description: GIIM Note: maturase Location: 21363-21594 bp Feature: domain Description: GIIM Note: maturase Location: 213 63 -21594 bp Feature: gene Location: 21976-23190 bp Ori: RGW94268.1 Feature: domain Description: TraG-D_C Location: 22558-22888 bp Feature: domain Description: TraG-D_C Location: 22558-22888 bp Feature: gene Location: 23450-23887 bp Ori: RGW94269.1 Feature: domain Description: PRK00331 Location: 23456-23885 bp Feature: domain Description: PRK003 3 1 Location: 23 456-23 885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), TraG-D_C (pfam12696), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase)

Seq: QSBD01000056.1 Bacteroides stercoris strain AF05-4 AF05-4.Scaf56, whole genome shotgun sequence (3310 bp)
Overview 1 RT 1: 373-3179 bp Neighborhood of RT #1 [373, 3214] RVT-GII GIIM RrnaAD Feature: gene Location: 373-1668 bp Ori: RGW92332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1183 bp Feature: domain Description: GIIM Note: maturase Location: 1255-1468 bp Feature: domain Description: GIIM Note: maturase Location: 1255-14 68 bp Feature: gene Location: 2414-3214 bp Ori: RGW92333.1 Gene: erm(F) Feature: domain Description: RrnaAD Location: 2441-3179 bp Feature: domain Description: RrnaAD Location: 24 4 1-3179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RrnaAD (pfam00398)

Seq: QSBD01000001.1 Bacteroides stercoris strain AF05-4 AF05-4.Scaf1, whole genome shotgun sequence (490159 bp)
Overview 1 RT 1: 251155-255088 bp Neighborhood of RT #1 [251155, 255088] RVT-UG27 Feature: gene Location: 251155-251802 bp Feature: gene Location: 251816-252484 bp Feature: gene Location: 252477-253739 bp Ori: RGX00575.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 252669-253305 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 25 2669-25 3305 bp Feature: gene Location: 254062-254559 bp Feature: gene Location: 254609-255088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSBD01000003.1 Bacteroides stercoris strain AF05-4 AF05-4.Scaf3, whole genome shotgun sequence (203687 bp)
Overview 1 RT 1: 95290-104791 bp Neighborhood of RT #1 [95290, 104791] RVT-DGRs Feature: gene Location: 95290-95532 bp Feature: gene Location: 95718-96203 bp Feature: gene Location: 96200-97501 bp Ori: RGW99907.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96413-97010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96 413-97010 bp Feature: gene Location: 97877-98110 bp Feature: gene Location: 98240-104791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs