myRT

myRT report for GCA_003465695.1_ASM346569v1

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Seq: QSBJ01000029.1 Bacteroides vulgatus strain AF04-25 AF04-25.Scaf29, whole genome shotgun sequence (50163 bp)
Overview 1 RT 1: 46327-50019 bp Neighborhood of RT #1 [46327, 50054] RVT-GII GIIM RrnaAD Feature: gene Location: 46327-46635 bp Feature: gene Location: 46669-46872 bp Feature: gene Location: 47213-48508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47408-48023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47408-48023 bp Feature: domain Description: GIIM Note: maturase Location: 48095-48308 bp Feature: domain Description: GIIM Note: maturase Location: 48095-48308 bp Feature: gene Location: 49038-49235 bp Feature: gene Location: 49254-50054 bp Feature: domain Description: RrnaAD Location: 49281-50019 bp Feature: domain Description: RrnaAD Location: 49281 -5001 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RrnaAD (pfam00398)

Seq: QSBJ01000010.1 Bacteroides vulgatus strain AF04-25 AF04-25.Scaf10, whole genome shotgun sequence (94019 bp)
Overview 1 RT 1: 1-5480 bp Neighborhood of RT #1 [1, 5551] RVT_N RVT-GII GIIM Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 Feature: gene Location: 1-115 bp Feature: gene Location: 124-1770 bp Feature: RT Description: RVT_N Location: 178-421 bp Feature: RT Description: RVT_N Location: 178-42 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1111 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1396 bp Feature: gene Location: 2997-5150 bp Feature: domain Description: Bac_Flav_CT_G Location: 3147-4653 bp Feature: domain Description: Bac_Flav_CT_G Location: 3147-4653 bp Feature: domain Description: Bac_Flav_CT_G Location: 4761-5151 bp Feature: domain Description: Bac_Flav_CT_G Location: 4761-5151 bp Feature: gene Location: 5255-5551 bp Feature: domain Description: DUF4133 Location: 5297-5480 bp Feature: domain Description: DUF4133 Location: 52 97-5480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)

Seq: QSBJ01000087.1 Bacteroides vulgatus strain AF04-25 AF04-25.Scaf87, whole genome shotgun sequence (15797 bp)
Overview 1 RT 1: 10152-12719 bp Neighborhood of RT #1 [10152, 12719] RVT-GII Intron_maturas2 DUF4134 Feature: gene Location: 10152-10861 bp Feature: gene Location: 10895-11044 bp Feature: gene Location: 11034-12017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11097-11295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11097-11295 bp Feature: domain Description: Intron_maturas2 Location: 11364-11676 bp Feature: domain Description: Intron_maturas2 Location: 113 64-11676 bp Feature: gene Location: 12017-12208 bp Feature: domain Description: DUF4134 Location: 12026-12209 bp Feature: domain Description: DUF413 4 Location: 12026-12209 bp Feature: gene Location: 12246-12719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DUF4134 (pfam13572)

Seq: QSBJ01000124.1 Bacteroides vulgatus strain AF04-25 AF04-25.Scaf124, whole genome shotgun sequence (3988 bp)
Overview 1 RT 1: 1-3467 bp Neighborhood of RT #1 [1, 3487] INTN1_C_like RVT-GII Intron_maturas2 COG3943 HTH_17 Feature: gene Location: 1-171 bp Feature: domain Description: INTN1_C_like Location: 4-154 bp Feature: domain Description: INTN1_C_like Location: 4 -154 bp Feature: gene Location: 722-2530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1808 bp Feature: domain Description: Intron_maturas2 Location: 1931-2186 bp Feature: domain Description: Intron_maturas2 Location: 1931-2186 bp Feature: gene Location: 2745-3107 bp Feature: domain Description: COG3943 Location: 2784-3033 bp Feature: domain Description: COG394 3 Location: 2784 -3033 bp Feature: gene Location: 3182-3487 bp Feature: domain Description: HTH_17 Location: 3320-3467 bp Feature: domain Description: HTH_17 Location: 3320-34 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSBJ01000041.1 Bacteroides vulgatus strain AF04-25 AF04-25.Scaf41, whole genome shotgun sequence (41819 bp)
Overview 1 RT 1: 30517-40018 bp Neighborhood of RT #1 [30517, 40018] RVT-DGRs Feature: gene Location: 30517-37068 bp Feature: gene Location: 37198-37431 bp Feature: gene Location: 37807-39108 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38020-38614 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38020-38614 bp Feature: gene Location: 39105-39590 bp Feature: gene Location: 39776-40018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs