myRT

myRT report for GCA_003465715.1_ASM346571v1

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Seq: QSBL01000034.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf34, whole genome shotgun sequence (74456 bp)
Overview 1 RT 1: 1749-5536 bp Neighborhood of RT #1 [1749, 5682] RVT-GII KOG1378 Feature: gene Location: 1749-1955 bp Feature: gene Location: 2091-2348 bp Feature: gene Location: 2274-3628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2610-2766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 0-2766 bp Feature: gene Location: 3918-4175 bp Feature: gene Location: 4513-5682 bp Feature: domain Description: KOG1378 Location: 4624-5536 bp Feature: domain Description: KOG1 378 Location: 4624-5536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG1378 (KOG1378, Purple acid phosphatase )

Seq: QSBL01000046.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf46, whole genome shotgun sequence (49526 bp)
Overview 1 RT 1: 5097-11739 bp Neighborhood of RT #1 [5097, 11795] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 5097-6800 bp Feature: domain Description: REC Location: 5886-6144 bp Feature: domain Description: REC Location: 5886-6144 bp Feature: gene Location: 6797-7441 bp Feature: gene Location: 7419-9638 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7620-8205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 762 0-82 05 bp Feature: gene Location: 9917-10882 bp Feature: domain Description: Phage_int_SAM_5 Location: 9950-10205 bp Feature: domain Description: Phage_int_SAM_5 Location: 9950-102 05 bp Feature: domain Description: INTN1_C_like Location: 10310-10787 bp Feature: domain Description: INTN1_C_like Location: 10310-10787 bp Feature: gene Location: 11217-11795 bp Feature: domain Description: NGN_SP_UpxY Location: 11295-11577 bp Feature: domain Description: NGN_SP_UpxY Location: 112 95-11577 bp Feature: domain Description: KOW_NusG Location: 11628-11739 bp Feature: domain Description: KOW_NusG Location: 1162 8-11739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QSBL01000016.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf16, whole genome shotgun sequence (137940 bp)
Overview 1 RT 1: 7215-12101 bp Neighborhood of RT #1 [7215, 12127] DUF3875 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 7215-7385 bp Feature: domain Description: DUF3875 Location: 7224-7380 bp Feature: domain Description: DUF3 875 Location: 7224-73 80 bp Feature: gene Location: 7404-9299 bp Feature: domain Description: Bac_Flav_CT_G Location: 7407-9243 bp Feature: domain Description: Bac_Flav_CT_G Location: 7407-9243 bp Feature: gene Location: 9870-11516 bp Feature: RT Description: RVT_N Location: 9924-10167 bp Feature: RT Description: RVT_N Location: 9924-10167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10212-10857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10212-10857 bp Feature: domain Description: GIIM Note: maturase Location: 10911-11142 bp Feature: domain Description: GIIM Note: maturase Location: 10911-11142 bp Feature: gene Location: 11660-11935 bp Feature: domain Description: Bac_Flav_CT_G Location: 11663-11933 bp Feature: domain Description: Bac_Flav_CT_G Location: 11663 -1193 3 bp Feature: gene Location: 11942-12127 bp Feature: domain Description: Bac_Flav_CT_G Location: 11945-12101 bp Feature: domain Description: Bac_Flav_CT_G Location: 11945-12101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF3875 (pfam12991), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSBL01000041.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf41, whole genome shotgun sequence (55228 bp)
Overview 1 RT 1: 396-4635 bp Neighborhood of RT #1 [396, 4670] Mfa_like_1 DUF1566 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 396-1676 bp Feature: domain Description: Mfa_like_1 Location: 468-879 bp Feature: domain Description: Mfa_like_1 Location: 4 68-879 bp Feature: domain Description: DUF1566 Location: 1371-1665 bp Feature: domain Description: DUF1566 Location: 1371-1665 bp Feature: gene Location: 2013-2333 bp Feature: domain Description: HTH_28 Location: 2067-2211 bp Feature: domain Description: HTH_28 Location: 2067-2211 bp Feature: gene Location: 2424-2621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427-2619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 27-2619 bp Feature: gene Location: 2599-2976 bp Feature: RT Description: RVT_N Location: 2602-2827 bp Feature: RT Description: RVT_N Location: 2602-2827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881-2950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881-2950 bp Feature: gene Location: 2990-3226 bp Feature: gene Location: 3921-4670 bp Feature: domain Description: GDPD_like_2 Location: 3978-4635 bp Feature: domain Description: GDPD_like_2 Location: 3978-4 635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), Mfa_like_1 (pfam13149), DUF1566 (pfam07603), GDPD_like_2 (cd08582)

Seq: QSBL01000020.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf20, whole genome shotgun sequence (125272 bp)
Overview 1 RT 1: 64336-76882 bp Neighborhood of RT #1 [64336, 76882] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 64336-66138 bp Feature: domain Description: rpsA Location: 64405-66022 bp Feature: domain Description: rpsA Location: 64405 -66022 bp Feature: gene Location: 66235-72192 bp Feature: domain Description: DUF4011 Location: 67465-67978 bp Feature: domain Description: DUF4011 Location: 67465 -67978 bp Feature: domain Description: DEXXQc_SF1 Location: 68317-69178 bp Feature: domain Description: DEXXQc_SF1 Location: 68317-69178 bp Feature: domain Description: DEXXQc_SF1 Location: 69745-70504 bp Feature: domain Description: DEXXQc_SF1 Location: 69745 -705 04 bp Feature: domain Description: TIGR00376 Location: 70633-71023 bp Feature: domain Description: TIGR00376 Location: 70633-71023 bp Feature: domain Description: MTES_1575 Location: 71176-71461 bp Feature: domain Description: MTES_15 75 Location: 71176-71461 bp Feature: domain Description: DUF3320 Location: 71701-71842 bp Feature: domain Description: DUF3320 Location: 71701-71842 bp Feature: gene Location: 72194-73324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72515-73058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 725 15 -7305 8 bp Feature: gene Location: 73530-75692 bp Feature: gene Location: 76403-76882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: QSBL01000021.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf21, whole genome shotgun sequence (124441 bp)
Overview 1 RT 1: 89805-101151 bp Neighborhood of RT #1 [89805, 101189] Laminin_G_3 CotH RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 89805-90971 bp Feature: gene Location: 90981-97769 bp Feature: domain Description: Laminin_G_3 Location: 93417-93798 bp Feature: domain Description: Laminin_G_3 Location: 93417-93798 bp Feature: domain Description: CotH Location: 94062-95106 bp Feature: domain Description: CotH Location: 9406 2-95106 bp Feature: gene Location: 98203-99498 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98419-99010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98419-99010 bp Feature: gene Location: 99500-99994 bp Feature: gene Location: 100044-101189 bp Feature: domain Description: Arm-DNA-bind_5 Location: 100068-100314 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10006 8-100314 bp Feature: domain Description: Phage_int_SAM_5 Location: 100353-100638 bp Feature: domain Description: Phage_int_SAM_5 Location: 100353-1006 38 bp Feature: domain Description: INTN1_C_like Location: 100677-101151 bp Feature: domain Description: INTN1_C_like Location: 1006 77-101151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs

Seq: QSBL01000008.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf8, whole genome shotgun sequence (173471 bp)
Overview 1 RT 1: 53151-57422 bp 2 RT 2: 158040-161120 bp Neighborhood of RT #1 [53151, 58132] dnaG RVT-GII Intron_maturas2 Toprim_2 Mob_Pre Mob_Pre Neighborhood of RT #2 [158040, 161134] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 53151-53318 bp Feature: domain Description: dnaG Location: 53220-53319 bp Feature: domain Description: dnaG Location: 53220-53319 bp Feature: gene Location: 53423-53846 bp Feature: gene Location: 53881-55689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54145-54967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54145-54967 bp Feature: domain Description: Intron_maturas2 Location: 55036-55345 bp Feature: domain Description: Intron_maturas2 Location: 55036-55345 bp Feature: gene Location: 55679-56602 bp Feature: domain Description: Toprim_2 Location: 56210-56492 bp Feature: domain Description: Toprim_2 Location: 56210-56492 bp Feature: gene Location: 56786-58132 bp Feature: domain Description: Mob_Pre Location: 56792-57257 bp Feature: domain Description: Mob_Pre Location: 567 92-57 257 bp Feature: domain Description: Mob_Pre Location: 57269-57422 bp Feature: domain Description: Mob_Pre Location: 57 269-57 422 bp Feature: gene Location: 158040-158375 bp Feature: domain Description: DUF4133 Location: 158058-158319 bp Feature: domain Description: DUF4133 Location: 158058-158319 bp Feature: gene Location: 158405-158647 bp Feature: domain Description: DUF4134 Location: 158552-158642 bp Feature: domain Description: DUF4134 Location: 158552-158642 bp Feature: gene Location: 158644-160299 bp Feature: RT Description: RVT_N Location: 158701-158938 bp Feature: RT Description: RVT_N Location: 1587 01-158938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158989-159637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158989-159637 bp Feature: domain Description: GIIM Note: maturase Location: 159694-159925 bp Feature: domain Description: GIIM Note: maturase Location: 159694-159925 bp Feature: gene Location: 160595-160895 bp Feature: gene Location: 160916-161134 bp Feature: domain Description: DUF4134 Location: 160937-161120 bp Feature: domain Description: DUF4134 Location: 160937 -161120 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), Mob_Pre (pfam01076), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: QSBL01000010.1 Bacteroides ovatus strain AF04-17 AF04-17.Scaf10, whole genome shotgun sequence (167305 bp)
Overview 1 RT 1: 109847-113379 bp Neighborhood of RT #1 [109847, 113379] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 109847-110656 bp Feature: domain Description: DUF1566 Location: 110378-110627 bp Feature: domain Description: DUF1566 Location: 110378 -110627 bp Feature: gene Location: 110803-111210 bp Feature: domain Description: Avd_like Location: 110836-111145 bp Feature: domain Description: Avd_like Location: 1108 36-111145 bp Feature: gene Location: 111225-112646 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111600-112302 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111600-112302 bp Feature: gene Location: 112609-112887 bp Feature: gene Location: 113092-113379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs